View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_1 (Length: 452)
Name: NF2643_low_1
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 36831906 - 36832343
Alignment:
| Q |
1 |
taagagagttacacattttgtaccatactacactactattctactgctgtttctccattcatataataatatcactgaatcttcaaccattcaccacagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36831906 |
taagagagttacacattttgtaccatactacactactattctactgctgtttctccattcatataataatatcactgaatcttcaaccattcaccacagt |
36832005 |
T |
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| Q |
101 |
tccacctgaaaaaacatgttaatcaaaatcagtaaacttctccaattaattaatatagaaacattagaaacaagaatttaagtatgttaattaccattgg |
200 |
Q |
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| T |
36832006 |
tccacctgaaaaaacatgttaatcataatcagtaaacttctccaattaattaatatagaaacattagaaacaagaatttaagtatgttaattaccattgg |
36832105 |
T |
|
| Q |
201 |
ggtgaaggacttgtccagtaaaataagaggaacattggttggaggcaagaaagacataggatggagcaacctcaataggctgaccagctcttttcatagg |
300 |
Q |
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| T |
36832106 |
ggtgaaggacttgtccagtaaaataagaggaacattggttggaggcaagaaagacataggatggagcaacctcaataggctgaccagctcttttcatagg |
36832205 |
T |
|
| Q |
301 |
cacttgaccaccaaattgagcagtttcttcctccttgaaagatgctggtatcaatggtgtccatatgggtccaggtgccactccattgacccttataccc |
400 |
Q |
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| T |
36832206 |
cacttgaccaccaaattgagcagtttcttcctccttgaaagatgctggtatcaatggtgtccatatgggtccaggtgccactccattgacccttataccc |
36832305 |
T |
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| Q |
401 |
ttgctcaccagctgaagtgatagtccccttgtaaatgc |
438 |
Q |
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| T |
36832306 |
ttgctcaccagctgaagtgatagtccccttgtaaatgc |
36832343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 197 - 420
Target Start/End: Complemental strand, 46838430 - 46838207
Alignment:
| Q |
197 |
ttggggtgaaggacttgtccagtaaaataagaggaacattggttggaggcaagaaagacataggatggagcaacctcaataggctgaccagctcttttca |
296 |
Q |
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|||||||| || ||||| ||||| | |||||||| ||||||||||| |||||||| ||| | || ||||||||||||| ||| || ||||| || |||| |
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| T |
46838430 |
ttggggtggagaacttggccagttatgtaagaggagcattggttggaagcaagaaacacaaaagagggagcaacctcaacaggttgtccagccctcttca |
46838331 |
T |
|
| Q |
297 |
taggcacttgaccaccaaattgagcagtttcttcctccttgaaagatgctggtatcaatggtgtccatatgggtccaggtgccactccattgacccttat |
396 |
Q |
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| T |
46838330 |
ttggcacatcagaaccaaattgagcagtcttttcctcattgaaggaagctggtattaatggagtccaaataggtccaggtgcaaccccattcactcttat |
46838231 |
T |
|
| Q |
397 |
acccttgctcaccagctgaagtga |
420 |
Q |
| |
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||| |||||||| ||||||||||| |
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| T |
46838230 |
acctttgctcacaagctgaagtga |
46838207 |
T |
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