View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2643_low_16 (Length: 249)
Name: NF2643_low_16
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11491059 - 11490822
Alignment:
| Q |
1 |
aacgagcaacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgaaagaataccattagctgcaataggacttgcggaatttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||||| |
|
|
| T |
11491059 |
aacgagcaacaacgatccaatctagaagaagtaggcaagaaaattgcaaaaaaatgtgatggattaccattagctgttatagaacttgcggaatttcttc |
11490960 |
T |
|
| Q |
101 |
acattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11490959 |
acattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctacca |
11490860 |
T |
|
| Q |
201 |
ttatctatcggctcctttaaaacagtgcttttaatatt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11490859 |
ttatctatcggctcctttaaaacagtgctttgaatatt |
11490822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 11497519 - 11497296
Alignment:
| Q |
8 |
aacaacgatccaatctagaagaaataggcaagaaaattgcnnnnnnntgtgaaagaataccattagctgcaataggacttgcggaatttcttcacattga |
107 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||| ||| | | ||||||||||||||| || | |||||| ||||||| |||||| |
|
|
| T |
11497519 |
aacaacgatccaatctagaagaaattggcagggaaattgcaaaaaaatgttacggtataccattagctgcagtatcaattgcggcttttcttcgcattga |
11497420 |
T |
|
| Q |
108 |
attgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatcta |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||| || |||| | |||||||||||||||||| ||| ||| || ||||| |
|
|
| T |
11497419 |
attgtccccatattactggaataatgtgctaatgcgtgacatttgggaatcaataggttatgacgtgcaacctgctctacaactgaactaccactatctt |
11497320 |
T |
|
| Q |
208 |
tcggctcctttaaaacagtgcttt |
231 |
Q |
| |
|
|| |||||||||||| ||||||| |
|
|
| T |
11497319 |
tctcctcctttaaaacggtgcttt |
11497296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 5052193 - 5052325
Alignment:
| Q |
106 |
gaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgtacattataaggtgcaacctgctctacaattgagctagcattatc |
205 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||||| ||||||| |||||| ||| || |
|
|
| T |
5052193 |
gaattttcccaggattactggaataatgtgctaatacgtgacatttgggaattggtacaatatgtcgtccaacctgcgctacaatcgagctacaattctc |
5052292 |
T |
|
| Q |
206 |
tatcggctcctttaaaacagtgcttttaatatt |
238 |
Q |
| |
|
| || ||||||||||||||||||||| |||||| |
|
|
| T |
5052293 |
tttcagctcctttaaaacagtgctttgaatatt |
5052325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 21539463 - 21539339
Alignment:
| Q |
107 |
aattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgta-cattataaggtgcaacctgctctacaattgagctagcattatc |
205 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| ||||||||||||||||| ||| |||||| | |||||||||| ||||||||||| ||| ||| ||| |
|
|
| T |
21539463 |
aattgtcccaagattattggaataatgtgttaactcgtgacatttgggaattggtaccattatcacgtgcaacctgttctacaattgaactaccatgatc |
21539364 |
T |
|
| Q |
206 |
tatcggctcctttaaaacagtgcttt |
231 |
Q |
| |
|
| |||| ||||||||||| ||||||| |
|
|
| T |
21539363 |
t-tcggatcctttaaaaccgtgcttt |
21539339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 231
Target Start/End: Original strand, 18388279 - 18388448
Alignment:
| Q |
62 |
gaataccattagctgcaataggacttgcggaatttcttcacattgaattgtccccggattactggaataatgtgctaatacgtgacatttgggaatttgt |
161 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||| | || |||||||| |||||||||| ||| |||| | |||||||||||||||| || |
|
|
| T |
18388279 |
gaataccattagctgcaatatcacttggggattttcttcacttagatttgtccccaagttactggaattatgcgctagaaagtgacatttgggaattggt |
18388378 |
T |
|
| Q |
162 |
acattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtgcttt |
231 |
Q |
| |
|
| ||||| | ||||| | |||||||||||||| ||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
18388379 |
agattatgatgtgcaccgtgctctacaattgatctacagttatctatcgactcctttaaaacggtgcttt |
18388448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 17312003 - 17312179
Alignment:
| Q |
65 |
taccattagctgcaataggacttgcggaatttcttcacattgaattgtccc---cggattactggaataatgtgctaatacgtgacatttgggaatttgt |
161 |
Q |
| |
|
|||||||||||||| ||| |||||| || |||||| ||| ||||||||| ||||||||| ||||||| | ||||||| | | ||||||||||| || |
|
|
| T |
17312003 |
taccattagctgcagtagcacttgcagattttctttgcatcaaattgtcccagccggattacttgaataatttcctaatacataaaatttgggaattggt |
17312102 |
T |
|
| Q |
162 |
acattataaggtgcaacctgctctacaattgagctagcattatctatcggctcctttaaaacagtgcttttaatatt |
238 |
Q |
| |
|
||||||| | | | ||||||||||||||||||||| |||||| || ||||||||||| ||||||| |||||| |
|
|
| T |
17312103 |
acattatgatattctacctgctctacaattgagctactgttatcttctggatcctttaaaacggtgctttgaatatt |
17312179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University