View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_17 (Length: 238)
Name: NF2643_low_17
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40053381 - 40053166
Alignment:
| Q |
1 |
tatgttaatatgtacggtgtatgtcttaacatagcattagaactatattacttttattcacgtatgaaagtttatcgtatttcaaatctgtttgacaagc |
100 |
Q |
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| T |
40053381 |
tatgttaatatgtacggtgtatgtcttaacatagcattagaactatattatttttattcacgtatgaaagtttatcgtatttcaaatctgtttgacaaac |
40053282 |
T |
|
| Q |
101 |
ttcttgatccctaannnnnnnnnnnnnnnnnnnnatctaaaaggtccaagtatgattagaattaagcaattagatagccgaaagggataaattaaaaatg |
200 |
Q |
| |
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|||||||||||||| | |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40053281 |
ttcttgatccctaa---tttttttttttatctaaaactaaaaggaccatgtatgattaaaattaagcaattagatagccgaaagggataaattaaaaatg |
40053185 |
T |
|
| Q |
201 |
tacgttaatatgtatgtta |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
40053184 |
tacgttaatatgtatgtta |
40053166 |
T |
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