View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_2 (Length: 442)
Name: NF2643_low_2
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 6855529 - 6855950
Alignment:
| Q |
11 |
caaaggatggtatagtaatatgtatggtgtttt------cagacaaataatagaaatggacagcattaggctcttgtttagctgcacgcaaaactctagt |
104 |
Q |
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| T |
6855529 |
caaaggatggtatagtaatatgtatgttgtttctgttaacagacaaataatagaaatggacagcattaggctcttgtttagctgcacgcaaaactctagt |
6855628 |
T |
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| Q |
105 |
aacaatagcgatactgttaattgtcagcagaacatgtttaacatataaattcaaaccaaatcatacacattaaatttatttccccgtaactagaaaacat |
204 |
Q |
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| T |
6855629 |
aacaatagctatactgttaattgtcagcagaacatgtttaacatataaattcaaaccaaatcatacacattaaatttatttccccgtaactagaaaacat |
6855728 |
T |
|
| Q |
205 |
taatcattatacttatatcgtgtctatttagcatataaatttgaggaaaaaagtcataaaactgcacacttttttgcctatatggtctaagagataacct |
304 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855729 |
taatccttatacttatatcgtgtctatttagcatataaatttgaggaaaaaagtcataaaactgcacacttttttgcctatatggtctaagagataacct |
6855828 |
T |
|
| Q |
305 |
gaacaatgtggctagcatcaacctcaaatccatcgttggaaacagacgaatcataaagacgattacactgatcaagtctttgactttcatctctatattc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6855829 |
gaacaatgtggctagcatcaacctcaaatccatcgttggaaacagacgaatcataaagacgattacactgatcaagtctttgactttcatctctatattc |
6855928 |
T |
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| Q |
405 |
caatacccgttctctgtataac |
426 |
Q |
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| T |
6855929 |
caatacccgttctctgtataac |
6855950 |
T |
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