View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_20 (Length: 203)
Name: NF2643_low_20
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 27223884 - 27223714
Alignment:
| Q |
19 |
actatgtttctaaaaattcagtcaaaataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtggtgattttgttaa |
118 |
Q |
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| T |
27223884 |
actatgtttctaaaaattcagtcaaaataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtggtgattttgttaa |
27223785 |
T |
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| Q |
119 |
gagtgatgatgagtgtattatagagtggttgaactcaaagtcaccatcatctgtggtttacatctcctttg |
189 |
Q |
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| T |
27223784 |
gagtgatgatgagtgtatcatagagtggttgaactcaaagccaccatcatctgtggtttacatctcctttg |
27223714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 27228050 - 27227905
Alignment:
| Q |
44 |
aataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtggtgattttgttaagagtgatgatgagtgtattatagag |
143 |
Q |
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| T |
27228050 |
aataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtggtgatttagttaagagtgatgatgattgtattatagag |
27227951 |
T |
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| Q |
144 |
tggttgaactcaaagtcaccatcatctgtggtttacatctcctttg |
189 |
Q |
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| T |
27227950 |
tggttaaactcaaggccacaatcatctgtggtatacatctcatttg |
27227905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 11547113 - 11547030
Alignment:
| Q |
45 |
ataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtggtgattttgttaagagtgatgat |
128 |
Q |
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| T |
11547113 |
ataagacctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatattcgtggagattttgttaagagtgatgat |
11547030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 48653002 - 48652889
Alignment:
| Q |
45 |
ataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtggtgattttgttaagagtgatgatgagtgtattatagagt |
144 |
Q |
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| T |
48653002 |
ataagacccattggtccattgtttaacaactcaaacattaaaggtgcaaacaatatccgtggtgattttgttaagagtgatgattgtaatattatagagt |
48652903 |
T |
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| Q |
145 |
ggttgaactcaaag |
158 |
Q |
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| T |
48652902 |
ggctaaactcaaag |
48652889 |
T |
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