View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_4 (Length: 373)
Name: NF2643_low_4
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 25 - 355
Target Start/End: Original strand, 46812569 - 46812896
Alignment:
| Q |
25 |
cataggcttgaatccatctactgaatcgatacaagaaaacattgcccaatattatcaatagtaaatgtattcatataatgcaatgctattgatgtggtaa |
124 |
Q |
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| T |
46812569 |
cataggcttgaatccatttactgaatcgatacaagaaaacattgcccaatattatcaatagtaaatgtattcatataatgcaatgctattgatgtggtaa |
46812668 |
T |
|
| Q |
125 |
catctcataaagcaatttgcaaataacaacatattacaaactaattgttctgacaactgtgtaatattacagtaatctgtccttgtattatgcatcgcaa |
224 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46812669 |
catctcataaagcaatttgcaaataaca---tattacaaactaattgttctgacaactgtgtaatattacagtaatctgtccttgtattatgcatcgcaa |
46812765 |
T |
|
| Q |
225 |
cacagttaatgaagcacataaagtcagtagcccgaaaacacatgttatagcataagatactttctttagataacgggcaagcacttaacacacaaaaaga |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46812766 |
cacagttaatgaagcacataaagtcagtagcccgaaaacacatgttatagcataagatactttctttagataacgggcaagcacttaacacacaaaaaga |
46812865 |
T |
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| Q |
325 |
agataacagttgataattcacagcaatagat |
355 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46812866 |
agataacagttgataattcacagcaatagat |
46812896 |
T |
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