View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2643_low_6 (Length: 359)
Name: NF2643_low_6
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 53148327 - 53147997
Alignment:
| Q |
17 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53148327 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
53148228 |
T |
|
| Q |
117 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggt--a |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53148227 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggtaaa |
53148128 |
T |
|
| Q |
215 |
aatttatgtttctcatcactcaattgagattaatgaatgtttcttgattctcacaatgtcatttgcttaattaacttcgttcaatttcgattcatatcta |
314 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53148127 |
aatttatgtttctcatcactcaattgagatt----aatgtttcttgattctcacaatgtcatttgcttaattaacttcgttcaatttcgattcatatcta |
53148032 |
T |
|
| Q |
315 |
gatcctttgaatttcattgttcatgtttatctctg |
349 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |
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| T |
53148031 |
gatccgttgaatttcattgttcatgtttatctctg |
53147997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 11734335 - 11734137
Alignment:
| Q |
17 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
116 |
Q |
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||||||| |||||||||||||| | ||||| |||||||| ||| |||||||||||||||||||||| ||||| || || ||||||||||| ||||| |
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| T |
11734335 |
atcttgagcctggtactatggattccgttagatccggtccgtttggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataa |
11734236 |
T |
|
| Q |
117 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggtaa |
215 |
Q |
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|
|||||| |||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11734235 |
ttgggctaaaggtcattataccgaaggcgctgagcttattgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaa |
11734137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 5530627 - 5530824
Alignment:
| Q |
17 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
116 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | ||||| |||| ||| |||||||| | || |||||||| |||||||| || ||||||||| ||||| |
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|
| T |
5530627 |
atcttgaaccgggtactatggatagtatccggtctggaccgtatggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataa |
5530726 |
T |
|
| Q |
117 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
214 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| |||| |
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|
| T |
5530727 |
ctgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta |
5530824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5923175 - 5922978
Alignment:
| Q |
17 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
116 |
Q |
| |
|
|||||||||| || |||||||| ||| || | ||||| |||| |||| |||||||| | || ||||| || |||||||| || ||||||||||||||| |
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|
| T |
5923175 |
atcttgaaccggggactatggacagtgtccggtctggaccgtacggtcagatctttagaccggataactttgtgtttggtcagagtggtgctggtaataa |
5923076 |
T |
|
| Q |
117 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
214 |
Q |
| |
|
||||| ||||| |||||||| ||||| |||||| | ||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| |||| |
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|
| T |
5923075 |
ctgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta |
5922978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 38178939 - 38178777
Alignment:
| Q |
52 |
ggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagt |
151 |
Q |
| |
|
|||||||| || |||||||||| || ||||| ||||| || || || || ||||| || ||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
38178939 |
ggtccgtttggccagatctttcgaccggataacttcgttttcggtcagtccggtgccggaaataattgggcgaaaggtcattacaccgaaggcgctgagt |
38178840 |
T |
|
| Q |
152 |
tgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
214 |
Q |
| |
|
||||||| || ||| | |||||||| | ||||| || |||||||| |||||||||||||||| |
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|
| T |
38178839 |
tgattgattccgttttggatgttgtgaggaaagaggctgagaattgcgattgcttgcaaggta |
38178777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5936584 - 5936387
Alignment:
| Q |
17 |
atcttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataa |
116 |
Q |
| |
|
|||||||||| || || ||||| ||| || | ||||| |||| |||| |||||||| | || ||||| || || |||||||| ||||||||||||||| |
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| T |
5936584 |
atcttgaaccgggaacgatggacagtgtccggtctggaccgtacggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataa |
5936485 |
T |
|
| Q |
117 |
ttgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
214 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||| | ||||| |||||||||||||||||| | |||||||| || || ||||||||||||| |||| |
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|
| T |
5936484 |
ctgggctaaaggacattacactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgaaaacagtgattgcttgcagggta |
5936387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 40919751 - 40919556
Alignment:
| Q |
19 |
cttgaacctggtactatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataatt |
118 |
Q |
| |
|
|||||||| ||||| ||||| ||| | | |||||||| || || || || ||| | |||||||| || |||||||||||| ||| ||||||||||||| |
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| T |
40919751 |
cttgaaccaggtaccatggacagtttacgttctggtccatttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataatt |
40919652 |
T |
|
| Q |
119 |
gggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
214 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||||| | ||||| |||||||||||||||||||| |||||||| |||||||| || ||||||||||||| |
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|
| T |
40919651 |
gggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta |
40919556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 45319382 - 45319506
Alignment:
| Q |
91 |
tttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcag |
190 |
Q |
| |
|
|||||||| |||||||| || || |||| ||||| |||||||| || || ||||| ||| | ||||||| ||||||||||||||| | || || | | |
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|
| T |
45319382 |
tttggacagtctggtgccggaaacaatttcgccaagggtcattacactgagggtgccgagctcattgactttgttcttgatgttgtaaggaaggaggttg |
45319481 |
T |
|
| Q |
191 |
agaattgtgattgcttgcaaggtaa |
215 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
45319482 |
agaattgtgattgcttgcaaggtaa |
45319506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 34839810 - 34839953
Alignment:
| Q |
60 |
cggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgac |
159 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| || || || || || || ||||| |||||||| ||||||||||| || ||||| ||||| | ||||| |
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|
| T |
34839810 |
cggtcagatcttccgtcctgataacttcgttttcggtcagtccggcgccggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattgat |
34839909 |
T |
|
| Q |
160 |
tctgttcttgatgttgttcgtaaagaagcagagaattgtgattg |
203 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |||||||| ||||| |
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|
| T |
34839910 |
tcagttctcgatgttgttcgtaaagaagctgagaattgcgattg |
34839953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 45454604 - 45454432
Alignment:
| Q |
31 |
actatggaaagtatcagatctggtccgttcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtc |
130 |
Q |
| |
|
|||||||| || ||||||||||||| | |||| |||| || || |||||||| || || |||||||| || ||||| || || || ||||| ||||||| |
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| T |
45454604 |
actatggatagcgtcagatctggtccatacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtc |
45454505 |
T |
|
| Q |
131 |
attataccgaaggtgctgagttgattgactctgttcttgatgttgttcgtaaagaagcagagaattgtgattg |
203 |
Q |
| |
|
| ||||| ||||| |||||||||||||| || || ||||||||||| | || || || |||||||||||||| |
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|
| T |
45454504 |
actatacagaaggagctgagttgattgattcggtgcttgatgttgtcaggaaggaggctgagaattgtgattg |
45454432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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