View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2643_low_8 (Length: 342)
Name: NF2643_low_8
Description: NF2643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2643_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 51231146 - 51231477
Alignment:
| Q |
15 |
actttttggatggatttgcttgcactgccctcttgttaaaggaaaaggaaaataatttgcggacatccataataagcattctacaaagaaagnnnnnnnn |
114 |
Q |
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| T |
51231146 |
actttttggatggatttgcttgcactgccctcttgttaaaggaaaaggaaaataatttgcggacatccataatacgcattctacaaagaaagaaaaaaaa |
51231245 |
T |
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| Q |
115 |
nnnnnntaa-------gagagtggtgtgatatattggtatgatattaggagagatacaaagaaaataaagtgtgtaatgaatgtggactcaacaacttat |
207 |
Q |
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| T |
51231246 |
aaaaaagaaaaaaaaagagagtggtgtgatatattggtatgatattaggagaaatacaaagaaaataaggtgtgtaatgaatgtggactcaacaacttat |
51231345 |
T |
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| Q |
208 |
acaaattatgaatggggtcaaatgcattttaatgatgagattcttcatatttctctcctatttttcgatcacaattgagaggatctatcttcgaatatta |
307 |
Q |
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| T |
51231346 |
aaaaattatgaatggggtcaaatgcattttaatgatgagattcttcatatttctctcctttttttcgttcacaattgagaggatctatcttcgaatatca |
51231445 |
T |
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| Q |
308 |
ttacccataactaaattttcatgtgcaactta |
339 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
51231446 |
ttatccataactaaattttcatgtgcaactta |
51231477 |
T |
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