View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2644_low_1 (Length: 345)
Name: NF2644_low_1
Description: NF2644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2644_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 3216872 - 3217211
Alignment:
| Q |
1 |
aatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccatt |
100 |
Q |
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| T |
3216872 |
aatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccatt |
3216971 |
T |
|
| Q |
101 |
ttgaaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattgga |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216972 |
ttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattgga |
3217071 |
T |
|
| Q |
201 |
atttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcc |
300 |
Q |
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| T |
3217072 |
atttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattgatagaacctcc |
3217171 |
T |
|
| Q |
301 |
tccttctcttctagagccttggcttcttctggggtcaatt |
340 |
Q |
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| T |
3217172 |
tccttctcttctagagccttggcttcttctggggtcaatt |
3217211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 340
Target Start/End: Original strand, 3202977 - 3203289
Alignment:
| Q |
28 |
acgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgaaggtggagagggcattccctcgt |
127 |
Q |
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| T |
3202977 |
acgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcat |
3203076 |
T |
|
| Q |
128 |
cagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttg |
227 |
Q |
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| T |
3203077 |
cggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatttccccacaattcttgattctgttg |
3203176 |
T |
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| Q |
228 |
caaccccaagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttct |
327 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |
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| T |
3203177 |
caaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctcattctcttctagaaccttggcttct |
3203276 |
T |
|
| Q |
328 |
tctggggtcaatt |
340 |
Q |
| |
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|| |||||||||| |
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| T |
3203277 |
tccggggtcaatt |
3203289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 35 - 340
Target Start/End: Original strand, 3208958 - 3209263
Alignment:
| Q |
35 |
tccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgaaggtggagagggcattccctcgtcagaaaa |
134 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| || ||||| ||||| |||||||| |
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| T |
3208958 |
tccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaa |
3209057 |
T |
|
| Q |
135 |
ggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaatttatccataatccttgactctgttgcaacccc |
234 |
Q |
| |
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||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| ||| || ||||| | ||||| |||||| |
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| T |
3209058 |
ggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatttccccacaagtcttgattttgttgtaacccc |
3209157 |
T |
|
| Q |
235 |
aagaagcttggtgtgtgagttgtatgtaatgaaaggatcttttctggtcgaattgatagaacctcctccttctcttctagagccttggcttcttctgggg |
334 |
Q |
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|||||||||| ||||||||||| ||||||||| || || || | ||| |||||||||||||||| ||||||||||||||||||||||| || |||| |
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| T |
3209158 |
aagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctcattctcttctagagccttggcttcctccgggg |
3209257 |
T |
|
| Q |
335 |
tcaatt |
340 |
Q |
| |
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|||||| |
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|
| T |
3209258 |
tcaatt |
3209263 |
T |
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