View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2644_low_2 (Length: 250)
Name: NF2644_low_2
Description: NF2644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2644_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 10011978 - 10011744
Alignment:
| Q |
16 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtgtcttggaatgacaaaactctaagccttcccactcaga |
115 |
Q |
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| T |
10011978 |
atggctccaaataatttaaatttcgaaatcagctcttccctccttaattaattgaatgaagtatcttggaatgacaaaactctaagccttcccactcaga |
10011879 |
T |
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| Q |
116 |
atttatttcggtatattttccatgcacctagatacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacactcaat |
215 |
Q |
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| T |
10011878 |
atttatttcggtatattttccatgcacctagatacactatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacaatcaat |
10011779 |
T |
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| Q |
216 |
acatccaaaaaccatttatattctccatggctcac |
250 |
Q |
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| T |
10011778 |
acatccaaaaaccatttatattctccatggctcac |
10011744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 39076201 - 39076149
Alignment:
| Q |
100 |
agccttcccactcagaatttatttcggtatattttccatgcacctagatacac |
152 |
Q |
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| T |
39076201 |
agccttctcactcagaatttatgttggtttgttttccatgcacctaggtacac |
39076149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 11215021 - 11215127
Alignment:
| Q |
116 |
atttatttcggtatattttccatgcacctagatacac-tatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacactcaa |
214 |
Q |
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| T |
11215021 |
atttattacgttatattttccatgcacctatgtacacgtttttgcatgctaattatgcctatataaggatgttaataaccatcagtcagtaattactcaa |
11215120 |
T |
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| Q |
215 |
tacatcc |
221 |
Q |
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|||||| |
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| T |
11215121 |
aacatcc |
11215127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 11225532 - 11225638
Alignment:
| Q |
116 |
atttatttcggtatattttccatgcacctagatacac-tatttgcctgcactctatgcctatatatggatgttactaaccatgagtcagtaaacactcaa |
214 |
Q |
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||||||| || ||||||||||||||||||| ||||| | ||||| ||| |||||||||||| |||||||| ||||||| ||||||||| |||||| |
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| T |
11225532 |
atttattacgttatattttccatgcacctatgtacacgtttttgcatgctaattatgcctatataaggatgttaataaccatcagtcagtaattactcaa |
11225631 |
T |
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| Q |
215 |
tacatcc |
221 |
Q |
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|||||| |
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| T |
11225632 |
aacatcc |
11225638 |
T |
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