View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2644_low_3 (Length: 249)
Name: NF2644_low_3
Description: NF2644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2644_low_3 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42080458 - 42080217
Alignment:
| Q |
1 |
acttggaagagagaagaaccgggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatca |
100 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42080458 |
acttggaagagagaagaaccgggaagccattataatattacctaattcagagatgtcttccctacctgagtaaatgccaactttcgtggttttggaatca |
42080359 |
T |
|
| Q |
101 |
acttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42080358 |
acttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaa |
42080259 |
T |
|
| Q |
201 |
agctgattgttttggccagtacaaacacaccaccttcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42080258 |
agctgattgttttggccagtacaaacacaccaccttcatctc |
42080217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 17392172 - 17392374
Alignment:
| Q |
39 |
tacctaattcagagatgtcttccctacctcagtaaatgccaacttt-cgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaa |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| | | |||| || | ||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
17392172 |
tacctaattcagagatttcttccctacctgagtaaacgacctcttttcgggtttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcactca |
17392271 |
T |
|
| Q |
138 |
cccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||| | |||||||||| ||||||||||||||||||||| | |||||| |||||||| |
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| T |
17392272 |
accattgcaaggcgtgatagagacccaaagcttcaccaatatcaaccgattaaacaccaataaagctgattgttttggccagaagaaacacgccaccttc |
17392371 |
T |
|
| Q |
238 |
atc |
240 |
Q |
| |
|
||| |
|
|
| T |
17392372 |
atc |
17392374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 13948966 - 13949178
Alignment:
| Q |
32 |
ataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgt |
131 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||| | |||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13948966 |
ataacattacctaattcaaagatgttttccctac-tgagtaaacgacatattttatggttttggaatcaacttcaaagtcgatattgtcgagttgcatgt |
13949064 |
T |
|
| Q |
132 |
cgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaa--caca |
229 |
Q |
| |
|
| | |||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||| |||||||| |||||||| |||| || | |
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|
| T |
13949065 |
cacacacccattgcaaggcttgatagagacccaaagtctcgccaatatcaaccgagtaaaaaccaacaaagttgattgttctggccagtgcaaacgcata |
13949164 |
T |
|
| Q |
230 |
ccaccttcatctca |
243 |
Q |
| |
|
|||||||||||||| |
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|
| T |
13949165 |
ccaccttcatctca |
13949178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 242
Target Start/End: Original strand, 3051098 - 3051317
Alignment:
| Q |
27 |
ccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttg |
126 |
Q |
| |
|
||||||||||| ||||||| ||||| |||| ||| |||||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||| |
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|
| T |
3051098 |
ccgtgataatagtacctaaatcagatatgttttctctacctgagtaaatggtctctttcgtggttttggaatcaatttcaaagtcgatattatcgggttg |
3051197 |
T |
|
| Q |
127 |
catgtcgctaacccattgcaaggcgtgata----gagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtac |
222 |
Q |
| |
|
|||||| || |||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| || || |
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|
| T |
3051198 |
catgtcactcgcccattacaaggcgtgatagatagagacccaaagcctcgtcaatatcaatcgagtaaacaccaacaaagttgattgttttggctagaac |
3051297 |
T |
|
| Q |
223 |
aaacacaccaccttcatctc |
242 |
Q |
| |
|
|||| |||| |||||||||| |
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|
| T |
3051298 |
aaacccaccgccttcatctc |
3051317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 27393147 - 27393364
Alignment:
| Q |
23 |
gaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaact-ttcgtggttttggaatcaacttcaaagtcgatattgtcg |
121 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||||||||| ||| |||||| || || || ||| ||||| ||||||||||||| ||||||||||| |
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|
| T |
27393147 |
gaagctgtgatgatattgcctaattcagaaatgtcttccctgcctgcgtaaattacatctctttgtgcttttgaaatcaacttcaaaatcgatattgtct |
27393246 |
T |
|
| Q |
122 |
agttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagta |
221 |
Q |
| |
|
|| ||||||| | |||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
27393247 |
ggt-gcatgtcaatcacccattgcaagacgtgatagagacccaaggcttcgccaatatcaaccgggtaaacaccaacaaagctgattgttttggccaaaa |
27393345 |
T |
|
| Q |
222 |
caaacacaccaccttcatc |
240 |
Q |
| |
|
||||||||||||||||||| |
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| T |
27393346 |
caaacacaccaccttcatc |
27393364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 40299861 - 40299656
Alignment:
| Q |
35 |
atattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgc |
134 |
Q |
| |
|
||||| ||||||||| | ||||||||| | || ||||||| || || | ||| |||||||||||| |||||| | |||||||||||||||||||| | |
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|
| T |
40299861 |
atattgcctaattcataaatgtcttccttgtctgagtaaatcgcatctcttgtgcttttggaatcaatttcaaaaccaatattgtcgagttgcatgtcac |
40299762 |
T |
|
| Q |
135 |
taacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccacc |
234 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||| | |||||||| ||||| |||||||||| |||||||||||||| |
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|
| T |
40299761 |
tcacccattgctaggcgtgatagagacccaaggcttcgccaatatcaattgagtaagcgacaacaaagttgattattttggccagaacaaacacaccacc |
40299662 |
T |
|
| Q |
235 |
ttcatc |
240 |
Q |
| |
|
|||||| |
|
|
| T |
40299661 |
ttcatc |
40299656 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 44091 - 43870
Alignment:
| Q |
21 |
gggaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatcaacttcaaagtcgatattgtc |
120 |
Q |
| |
|
||||||| ||||| ||| | |||||| |||| | ||||||||||| | ||||||| || || | ||| ||||| ||||||||||||| ||||||||||| |
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|
| T |
44091 |
gggaagctgtgatgataatgcctaatacagaaaagtcttccctacatgagtaaatcacatctcttgtgtttttgcaatcaacttcaaaatcgatattgtc |
43992 |
T |
|
| Q |
121 |
gagttgcatgtcgctaacccattgcaaggcgtgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagt |
220 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||| |||||| ||||||||||| | |
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|
| T |
43991 |
gagttgcatgtcactcatccattgcaaggcgtgatagagacccaaagcttcgccaatatcaatggagttaacaccataaaagcttattgttttggctaaa |
43892 |
T |
|
| Q |
221 |
acaaacacaccaccttcatctc |
242 |
Q |
| |
|
||||||||||||| ||| |||| |
|
|
| T |
43891 |
acaaacacaccactttcgtctc |
43870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 73484 - 73607
Alignment:
| Q |
1 |
acttggaagagagaagaaccgg-gaagccgtgataatattacctaattcagagatgtcttccctacctcagtaaatgccaactttcgtggttttggaatc |
99 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||| |
|
|
| T |
73484 |
acttggaagagagaagaacccgagaagccgtgataatatttcctaattcagagatgtcttcccttcctgggtaaatggcatctttcgtggttttggaatc |
73583 |
T |
|
| Q |
100 |
aacttcaaagtcgatattgtcgag |
123 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
73584 |
aacttcaaagttgatattgtcgag |
73607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 14995197 - 14995107
Alignment:
| Q |
152 |
tgatagagacccaaagcctcgccaatatcaacgaagtaaacaccaacaaagctgattgttttggccagtacaaacacaccaccttcatctc |
242 |
Q |
| |
|
|||||||| |||||||| || |||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
14995197 |
tgatagaggcccaaagcttcaccaatatcaattgaataaacaccaacaaagatgattgttttgaccagtacaaacacaccaccctcatctc |
14995107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34696249 - 34696313
Alignment:
| Q |
1 |
acttggaagagagaagaa-ccgggaagccgtgataatattacctaattcagagatgtcttcccta |
64 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
34696249 |
acttggaagagagaagaatccgggaagccgtgataatattacataataaagagatgtcttcccta |
34696313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 49746142 - 49746199
Alignment:
| Q |
90 |
ttttggaatcaacttcaaagtcgatattgtcgagttgcatgtcgctaacccattgcaa |
147 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
49746142 |
tttttgaatcaacttcaaaatcgatattgtcaagttgcagatcactaacccattgcaa |
49746199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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