View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2645_high_1 (Length: 380)
Name: NF2645_high_1
Description: NF2645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2645_high_1 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 15016754 - 15016406
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
15016754 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaatttgaccatacaaattattatcact |
15016655 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
15016654 |
caattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgttcaagcctcagtctcttaaggcttgagcaa |
15016555 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || |||| |||| | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15016554 |
ttcttcaaactctctggaactaggcctgtgaactggttaagagcagcagagaatttttccaacttcccaccgacacaaatattatgaggtaaatgaccaa |
15016455 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctatt |
366 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
15016454 |
caaaattattatcatacaaatcgagtgctttcaaatcggtaagcctatt |
15016406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 15001746 - 15001395
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001746 |
gtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
15001647 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||| || ||||||||| ||||||| |||||| |
|
|
| T |
15001646 |
caaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttttgttgaagtctcactctcgtaaggcttgagcaa |
15001547 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||| | | |||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
15001546 |
ttcttcaaactctctggaactaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcccaccgttacaaatattgtgaggtaaatgaccaa |
15001447 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctattcat |
369 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
15001446 |
caaaattattatcagataaatggagtacttccaaatctgtaagcctattcat |
15001395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 15024756 - 15024405
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15024756 |
gtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcatt |
15024657 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
15024656 |
caagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaa |
15024557 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||| | ||||||||| | | | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15024556 |
ttcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaa |
15024457 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctattcat |
369 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024456 |
caaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15024405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 15032097 - 15031746
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
15032097 |
gtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcatt |
15031998 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
15031997 |
caagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttttgatcaagcctcactcttttaaggcttaagcaa |
15031898 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||| | ||||||||| | | | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15031897 |
ttcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcccaccgacacaaatattgtgaggtaaatgaccaa |
15031798 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctattcat |
369 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15031797 |
caaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15031746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 15010639 - 15010288
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010639 |
gtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
15010540 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||| ||||| |||| ||||||| |||||| |
|
|
| T |
15010539 |
caattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttttgatcaagcctcagtctcgtaaggcttgagcaa |
15010440 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | | ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
15010439 |
ttcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcccaccaacacaaatattgtgaggtaaatgaccaa |
15010340 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctattcat |
369 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
15010339 |
caaaaatattatcagataaatggagtacttccaaatcgataagcctattcat |
15010288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 15036659 - 15036308
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||| ||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036659 |
gtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
15036560 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | || ||||| ||||| |||||| |||||| |
|
|
| T |
15036559 |
caagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttttggttaagcctcaatctctcaaggcttgagcaa |
15036460 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggttaagtgctgcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaa |
317 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| | | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15036459 |
ttcttcaaactctctggaactaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcccaccgacacaaatattgtgaggtaaatgaccaa |
15036360 |
T |
|
| Q |
318 |
caaaattattatcatataaatggagtgcttccaaatcggtaagcctattcat |
369 |
Q |
| |
|
||| |||||||||||||| | |||| |||||||||| |||||||||||||| |
|
|
| T |
15036359 |
taaatttattatcatataattcgagtacttccaaatccgtaagcctattcat |
15036308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 14523097 - 14523311
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14523097 |
gtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaatttggagaaagataaccataaaaattattatcact |
14523196 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||| | || |||| ||| ||||||| || || |
|
|
| T |
14523197 |
taattctatgtagtccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgttttggttaagtctcaatcttataaggctagaacag |
14523296 |
T |
|
| Q |
218 |
ttcttcaaactctct |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
14523297 |
ttcttcaaactctct |
14523311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 14503615 - 14503303
Alignment:
| Q |
24 |
ttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtc |
123 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||| |||||||| ||||| || || |
|
|
| T |
14503615 |
ttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaatttggtgatagatggccatacaaattattttcactcaattc |
14503516 |
T |
|
| Q |
124 |
catgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttc |
223 |
Q |
| |
|
|||||||||||| | |||||| |||||||||| |||||||||||||||||| ||||| |||| || || ||| ||||| ||||||||||||||||||| |
|
|
| T |
14503515 |
catgtagtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaattcttt |
14503416 |
T |
|
| Q |
224 |
aaactctcttgaactaggcctgtgaactggttaagtgct-gcagtgaatcgtctcaacttcccaccgacacaaatattttgaggtaaatgaccaacaaaa |
322 |
Q |
| |
|
||||||| | ||| | | |||||||| ||||| | | || |||||||| | ||||| | ||||| |||||||| || ||||||||||| || | ||| |
|
|
| T |
14503415 |
aaactctttggaattggccctgtgaattggtt-attactagcagtgaaatttgtcaacattccaccaacacaaatgttgtgaggtaaatggcctatgaaa |
14503317 |
T |
|
| Q |
323 |
ttattatcatataa |
336 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
14503316 |
ttattatcagataa |
14503303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 15040387 - 15040161
Alignment:
| Q |
26 |
cctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcacttaagtcca |
125 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| || |||| ||| ||| || | |||||| |||| || |||| |
|
|
| T |
15040387 |
cctgttaaattattgttggagattttaaggcttatgagattcttgcgttttccccaattaggtgaaatatggccaaaatatttattaccactcaattcca |
15040288 |
T |
|
| Q |
126 |
tgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaa |
225 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||| || || || ||||||||||| |
|
|
| T |
15040287 |
tgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttggttttgttcaagtctcactctctttagacttgaacaattcttcaa |
15040188 |
T |
|
| Q |
226 |
actctcttgaactaggcctgtgaactg |
252 |
Q |
| |
|
||||| | ||| | | ||||||||||| |
|
|
| T |
15040187 |
actctttggaattggacctgtgaactg |
15040161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 14533218 - 14533456
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |
|
|
| T |
14533218 |
gtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcact |
14533317 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| |||||||||||||| ||||||||||| ||||| ||| |||||||| |||| | ||| ||||||| || || ||||| |||| |||||||| |
|
|
| T |
14533318 |
caattccatgtagtccaaatttggatacacgccaaaggcatcagttatattgtcagttatttgattttgttgaagtcttactctgataagactggagcac |
14533417 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
||||||||||||| | ||| | |||||||||| |||||| |
|
|
| T |
14533418 |
ttcttcaaactctttggaattgggcctgtgaattggtta |
14533456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 14467442 - 14467204
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
||||||||||||| ||||| || ||| |||||||||||| |||||||||| |||| ||||||||||| || || ||||| ||||| |||||||||||||| |
|
|
| T |
14467442 |
gtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaattcggtgatagatggccatacaaattattatcact |
14467343 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| |||||||||||||| ||||||| ||| ||||| ||| |||||||| |||| | ||| ||||||| || ||| ||||| | |||||| ||||| |
|
|
| T |
14467342 |
caattccatgtagtccaattttggatgcacgccaaaggcatcagttatattgtcagttagttgattttgttgaagccttactctataaaggctagagcag |
14467243 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
||||||||||||| | ||| | |||||||||| |||||| |
|
|
| T |
14467242 |
ttcttcaaactctttggaattgggcctgtgaattggtta |
14467204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 6130 - 5892
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||||| | |||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6130 |
gtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcact |
6031 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| ||||| || ||||| || |||||||||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
6030 |
caattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaa |
5931 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
|| || ||||||| | ||||||| || ||||||||||| |
|
|
| T |
5930 |
ttttttaaactctttggaactagaccaatgaactggtta |
5892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 12418 - 12207
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |
|
|
| T |
12418 |
gtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcact |
12319 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
||| ||||||||| |||| | |||||| |||||||||| |||||||||||||||||| ||||| |||| || || ||| ||||| |||||||||||||| |
|
|
| T |
12318 |
taattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaa |
12219 |
T |
|
| Q |
218 |
ttcttcaaactc |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12218 |
ttcttcaaactc |
12207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 6774 - 6536
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||||| | |||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6774 |
gtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatttggagagagatgaccataaaaattattatcact |
6675 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
|| ||||| || ||||| || |||||||||||||| ||||||||||||||| |||||| ||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
6674 |
caattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttttgttgaagtctcactctcttaaggcttgagcaa |
6575 |
T |
|
| Q |
218 |
ttcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
|| || ||||||| | ||||||| || ||||||||||| |
|
|
| T |
6574 |
ttttttaaactctttggaactagaccaatgaactggtta |
6536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 13061 - 12850
Alignment:
| Q |
18 |
gtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatttggagaaagatgaccataaaaattattatcact |
117 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||||| |
|
|
| T |
13061 |
gtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatttggtgatatatggccataaaaattattatcact |
12962 |
T |
|
| Q |
118 |
taagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctcactctcttaaggctggagcaa |
217 |
Q |
| |
|
||| ||||||||| |||| | |||||| |||||||||| |||||||||||||||||| ||||| |||| || || ||| ||||| |||||||||||||| |
|
|
| T |
12961 |
taattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttttttgaagcctaactctaataaggctggagcaa |
12862 |
T |
|
| Q |
218 |
ttcttcaaactc |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12861 |
ttcttcaaactc |
12850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 256
Target Start/End: Complemental strand, 16102468 - 16102283
Alignment:
| Q |
71 |
cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttc |
170 |
Q |
| |
|
|||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16102468 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16102369 |
T |
|
| Q |
171 |
cagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
|||| | ||||||||| |||| || | ||| ||| ||| ||||||||||||||||||| ||||| |||| ||||| |||||| |
|
|
| T |
16102368 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16102283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 256
Target Start/End: Complemental strand, 16172146 - 16171961
Alignment:
| Q |
71 |
cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttc |
170 |
Q |
| |
|
|||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16172146 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16172047 |
T |
|
| Q |
171 |
cagtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaactctcttgaactaggcctgtgaactggtta |
256 |
Q |
| |
|
|||| | ||||||||| |||| || | ||| ||| ||| ||||||||||||||||||| ||||| |||| ||||| |||||| |
|
|
| T |
16172046 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16171961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 17848090 - 17847959
Alignment:
| Q |
98 |
ccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttccagtcaattggttttgttcaatcctca |
197 |
Q |
| |
|
|||||||||||||| | ||| || | |||||| ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||||| ||| | |
|
|
| T |
17848090 |
ccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaa |
17847991 |
T |
|
| Q |
198 |
ctctcttaaggctggagcaattcttcaaactc |
229 |
Q |
| |
|
||| || ||| |||||||||||||||||| |
|
|
| T |
17847990 |
ttcttacaatgcttgagcaattcttcaaactc |
17847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 15665775 - 15665931
Alignment:
| Q |
72 |
actttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttcc |
171 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||| ||| || ||||| | ||||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
15665775 |
actttccccaattggatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
15665874 |
T |
|
| Q |
172 |
agtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaact |
228 |
Q |
| |
|
| || ||||| ||||||| ||| | ||| ||||||| ||||||||||||||||| |
|
|
| T |
15665875 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaact |
15665931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 18643 - 18799
Alignment:
| Q |
72 |
actttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtccaagtttggatacacaccaaaactatctgttatatttcc |
171 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||||||||| ||| || ||||| | ||||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
18643 |
actttccccaattagatgaaaggtgaccataaaaattattgtcatccaatcccatgaactccaaatttgggtatacacccaaatcatctgttatgtttcc |
18742 |
T |
|
| Q |
172 |
agtcaattggttttgttcaatcctcactctcttaaggctggagcaattcttcaaact |
228 |
Q |
| |
|
| || ||||| ||||||| ||| | ||| ||||||| ||||||||||||||||| |
|
|
| T |
18743 |
atccatatggttatgttcaagcctaagtctaataaggctagagcaattcttcaaact |
18799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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