View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2645_high_3 (Length: 257)
Name: NF2645_high_3
Description: NF2645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2645_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 76 - 233
Target Start/End: Complemental strand, 6518171 - 6518014
Alignment:
| Q |
76 |
tatagttgcatttgaaaattaggcaatgttctgctagattgatgtatatatcattaaaaatgcaaatgaaggatagttatctcagattaaaattctagat |
175 |
Q |
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| T |
6518171 |
tatagttgcatttgaaaattaggcaatgttctgctagattgatgtatatatcattaaaaatgcaaatgaaggatagttatctcagattaaaattctagat |
6518072 |
T |
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| Q |
176 |
atgttttctctcaagtactctgcatatgatagtctctttattttatgctaatactggt |
233 |
Q |
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| T |
6518071 |
atgttttctctcaagtactctgcatatgatagtctctttattttatgctaatactggt |
6518014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6518313 - 6518235
Alignment:
| Q |
1 |
agacagtatagaacaaaatgaatggaaaaataatgagatggaacaacttgagaaagagtatagggatcttcttcatata |
79 |
Q |
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| T |
6518313 |
agacagtatagaacaaaatgaatggaaaaataatgagatggaacaacttgagaaagagtatagggatcttcttcatata |
6518235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1740489 - 1740550
Alignment:
| Q |
15 |
aaaatgaatggaaaaataatgagatggaacaacttgagaaagagtatagggatcttcttcat |
76 |
Q |
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| T |
1740489 |
aaaatggatggagagatgatgaaatggaacaacttgagaaagagtataaggatcttcatcat |
1740550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 27248961 - 27248999
Alignment:
| Q |
33 |
atgagatggaacaacttgagaaagagtatagggatcttc |
71 |
Q |
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| T |
27248961 |
atgaaatggaacaacttgagaaagagtatatggatcttc |
27248999 |
T |
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