View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2645_low_2 (Length: 307)
Name: NF2645_low_2
Description: NF2645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2645_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 1597702 - 1597980
Alignment:
| Q |
19 |
tcctttaatattattatttttctcttcagaagagatacacttgatatttgagtaaaccaaacaactaggtaatttattttataaataacatttgttgtaa |
118 |
Q |
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| T |
1597702 |
tcctttaatattattatttttctcttcagaaaagacacacttgatatttgagtaaaccaaacaactaggtaatttattttgtaaataacatttgttgtaa |
1597801 |
T |
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| Q |
119 |
catgtaagaacaagttgtggatcagctgaactattaattgtcttgggcttcaatgtgagaaaaataagcaactcattttgagttgagaaagcactttaat |
218 |
Q |
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| T |
1597802 |
catgtaagaacaagttgtggatcagctgaactattaattgtcttgggcttcaatgtgagaaaaataagcaactcattttgagttgagaaagcactttaat |
1597901 |
T |
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| Q |
219 |
gtggtcacactcacacaatgtcacattgttgttaaccaattcataaacaactaacatgtgtatgcttctttttgttcat |
297 |
Q |
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| T |
1597902 |
gtggtcacactcacacaatgtcacattgttgttaaccaattcataaacaactaacatgtgtatgcttctttttgttcat |
1597980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 1540234 - 1540108
Alignment:
| Q |
173 |
gtgagaaaaataagcaactcattttgag-----ttgagaaagcactttaatgtggtcacactcacacaatgtcacattgttgttaaccaattcataaaca |
267 |
Q |
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| T |
1540234 |
gtgagaaaaataagcaactcattttgagaagagttgagaaaatactttaaagtggtcacactcacacaatgtcacattgttgttaacatattcataaaca |
1540135 |
T |
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| Q |
268 |
actaacatgtgtatgcttctttttgtt |
294 |
Q |
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| T |
1540134 |
aataacacgtgtctgcttctttttgtt |
1540108 |
T |
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