View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2645_low_5 (Length: 234)
Name: NF2645_low_5
Description: NF2645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2645_low_5 |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0491 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 1597506 - 1597724
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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| T |
1597506 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaa--tctcaaggt |
1597603 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaatcttgatgtacttggtgattattactttaataactgaatgaatattttcttttttatactccatttatcaatgtatgtc |
213 |
Q |
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| T |
1597604 |
ttacaatttcaacaagaaaaatcttgatgtacttggtgattattactttaataactgaatgaatattttcttttttatactccatttatcaatgtatgtc |
1597703 |
T |
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| Q |
214 |
ctttaatattattatttttct |
234 |
Q |
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||||||||||||||||||||| |
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| T |
1597704 |
ctttaatattattatttttct |
1597724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 1540418 - 1540275
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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| T |
1540418 |
tgtttttgtataaa-ttgaactgcttctgtttcaattattatgttaattgaattaaaatataaaggtattgcaattgcttcaatc--aaaatctcaaggt |
1540322 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaa--tcttgatgtacttggtgattatta |
158 |
Q |
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| T |
1540321 |
ttacaaattcaacaaaaaaaaattcttgatgtacttggtgattatta |
1540275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 1563598 - 1563446
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaa----ttaaaagataaaggtattgcaattgcttcaatcaaaaaatctca |
109 |
Q |
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| T |
1563598 |
tgtttttgtataaagttaaactacttctgtttcaattattatgttaattgaattaattaaaagataaaggtattgcaattgcttcaatc--aaaatctca |
1563501 |
T |
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| Q |
110 |
aggtttacaatttcaacaagaaaaa---tcttgatgtacttggtgattattactt |
161 |
Q |
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| T |
1563500 |
aggtttacaaattcaacaaaaaaaaaattcttgatgtacttggtgattattactt |
1563446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 226
Target Start/End: Original strand, 1605524 - 1605676
Alignment:
| Q |
64 |
aattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggtttacaatttcaacaagaaaaatcttgatgtacttggtgattattacttta |
163 |
Q |
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| T |
1605524 |
aattaaaaaataaaggtattgcaattacttcaatcaaaa----------tctacaatttccacac-aaaaatcttgacgtactaggggattattacttta |
1605612 |
T |
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| Q |
164 |
ataactgaatgaatattttcttttttatactccattta-tcaatgtatgtcctttaatattatt |
226 |
Q |
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| T |
1605613 |
ataactgaatgaatgttttcatttttatactccatttagtcattgtatgtcctttgatattatt |
1605676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 1089776 - 1089947
Alignment:
| Q |
17 |
ttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggttta |
116 |
Q |
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||||| |||||| |||||||| |||| || ||||||||||||||||||||| || | ||||||||||||||| |||||||| ||| |||| ||||||| |
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| T |
1089776 |
ttttgaataaaactgaactacatctgggtccattattatgttaattgaattagaaaaaaaaggtattgcaattacttcaatc--aaattctctaggttta |
1089873 |
T |
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| Q |
117 |
caatttcaacaagaaaaatcttgatgtactt-ggtgattattactttaataactgaatgaatattttcttttttat |
191 |
Q |
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||| ||| ||| ||| | |||||||||||| || ||||||| ||| || ||||||||||||| ||||| |||||| |
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| T |
1089874 |
caaattccaca--aaataacttgatgtacttgggggattattccttcaacaactgaatgaataatttctcttttat |
1089947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 1107192 - 1107289
Alignment:
| Q |
130 |
aaaaatcttgatgtacttggtgattattactttaataactgaatgaatattttcttttttatactccattta-tcaatgtatgtcctttaatattatt |
226 |
Q |
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| T |
1107192 |
aaaaatcttgacgtactaggggattattactttaataactgaatgaatgttttcatttttatactccatttagtcattgtatgttctttgatattatt |
1107289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 5059 - 4915
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
5059 |
tgtttttgtataaaattgaattacttctgtttcaattattatgttaactgaattaaaagataaaggtattgcaattgattcaatc--aatatctcaaggt |
4962 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaat--cttgatgtacttggtgattatta |
158 |
Q |
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| T |
4961 |
ttacaaattcaacaaaaaaaattacttgatgtacttggtgattatta |
4915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 18748218 - 18748074
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
18748218 |
tgtttttgtataaaattgaattacttctgtttcaattattatgttaactgaattaaaagataaaggtattgcaattgattcaatc--aatatctcaaggt |
18748121 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaa--tcttgatgtacttggtgattatta |
158 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
18748120 |
ttacaaattcaacaaaaaaaaattcttgatgtacttggtgattatta |
18748074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 18738289 - 18738146
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
18738289 |
tgtttttgtataaaattgaattacttctgtttcaattattatgataactgaattaaaagataaaggtattgcaattgattcaatc--aatatctcaaggt |
18738192 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaa-tcttgatgtacttggtgattatta |
158 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
18738191 |
ttacaaattcaacaaaaaaaattcttgatgtacttggtgattatta |
18738146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 18743253 - 18743110
Alignment:
| Q |
14 |
tgtttttgtataaaattgaactacttctgtttcaattattatgttaattgaattaaaagataaaggtattgcaattgcttcaatcaaaaaatctcaaggt |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
18743253 |
tgtttttgtataaaattgaattacttctgtttcaattattatgataactgaattaaaagataaaggtattgcaattgattcaatc--aatatctcaaggt |
18743156 |
T |
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| Q |
114 |
ttacaatttcaacaagaaaaa-tcttgatgtacttggtgattatta |
158 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
18743155 |
ttacaaattcaacaaaaaaaattcttgatgtacttggtgattatta |
18743110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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