View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_high_1 (Length: 576)
Name: NF2646_high_1
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Original strand, 26095730 - 26096287
Alignment:
| Q |
1 |
catggaattcaaagaagacgttgagcatccttgcaagaccaacaaactacctgggatggataaa-taaggtatttctgttttcactatttttatggccac |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26095730 |
catggaattcaaagaagacgttgagcatccttgcaagaccaacaaactacctgggatggataaaataaggtatttctgttttcactatttttatggccac |
26095829 |
T |
|
| Q |
100 |
ataaaggaggaatgcatcgaactgaatgttgtgatagaggatttgatcctaaagggaaagttgaagaggttcaaagcatgaaatgaatggggagctcatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26095830 |
ataaaggaggaatgcatcgaactgaatgttgtgatagaggatttgatcttaaagggaaagttgaagaggttcaaagcatgaaatgaatggggagcccatt |
26095929 |
T |
|
| Q |
200 |
ccttttatacacaaacccatactctcatgtcatcagggcacataaactctaagagaaagtatgaagaataaggaatgaaccccgacctcggggtgtttga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095930 |
ccttttatacacaaacccatactctcatgtcatcagggcacataagctctaaaagaaagtatgaagaataaggaatgaaccccgacctcggggtgtttga |
26096029 |
T |
|
| Q |
300 |
tgataaatttggtaagtgcacaaagttgtaataagtaataaagtgataaattatcatctcaacataaattgttgtcaactcagaaatttactaaaactat |
399 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26096030 |
tgataaatttggtaagtgcacaaagttgtaataagtaataaagtgat-agttatcatctccacataaattgttgtcaactcagaaatttactaaaactat |
26096128 |
T |
|
| Q |
400 |
ttaaattaaaaagcagtaaagggtttcagggttgcaagtttgatttatctgcataataagagtagtagtttattgttgacaactaaagagtttaattcat |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26096129 |
ttaaattaaaaagcagtaaagggtttcagggttgcaagtttgatttgtctgcataataagagtagtagtttattgttgacaactaaagagtttgattcat |
26096228 |
T |
|
| Q |
500 |
gtgtttaacggtgattaggagtttttgaaaaattaagttagcatacaacaaacattggt |
558 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26096229 |
atgtttaacggtgatcaggagtttttgaaaaattaagttagcatacaacaaacattggt |
26096287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 24045126 - 24045082
Alignment:
| Q |
367 |
attgttgtcaactcagaaatttactaaaactatttaaattaaaaa |
411 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
24045126 |
attgttgtcaactcaacaatttactaaacttatttaaattaaaaa |
24045082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 18351204 - 18351081
Alignment:
| Q |
296 |
ttgatgataaatttggtaagtgcacaaagttgtaataagtaataaagtgataaattatcatctcaacataaattgttgtcaactcagaaatttactaaaa |
395 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||||||| ||||| ||| ||||| |||| |||||||| ||||||||||| |
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|
| T |
18351204 |
ttgatgataaatttgtcaagtgcatcaaaccgtaataagtaataaagtgataagttatcgtctttacatagtttgtcgtcaactcgacaatttactaaac |
18351105 |
T |
|
| Q |
396 |
ctatttaaattaaaaagcagtaaa |
419 |
Q |
| |
|
|||||||||||||||||| |||| |
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|
| T |
18351104 |
ttatttaaattaaaaagcaataaa |
18351081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 470
Target Start/End: Original strand, 34723255 - 34723428
Alignment:
| Q |
299 |
atgataaatttggtaagtgcacaaagttgtaataagtaataaagtgataaattatcatctcaacataaattgttgtcaactcagaaatttactaaaacta |
398 |
Q |
| |
|
|||| ||||||| ||||| ||| || ||||| |||| ||||||| ||||||||| |||| ||| ||||| ||||||||| ||||||||||| || |
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| T |
34723255 |
atgacaaatttgataagttcaccaaactgtaacaagtcataaagtaataaattatagtctccacaaggattgtcgtcaactcaacaatttactaaactta |
34723354 |
T |
|
| Q |
399 |
tttaaat-taaaaagcagt-aaagggtttcagggttgcaagtttgatttatctgcataataagagtagtagttt |
470 |
Q |
| |
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|| || | |||||| ||| ||||||||| |||||||||||||| | || |||| ||||||||||||||||| |
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|
| T |
34723355 |
ttaaattataaaaataagtaaaagggtttaagggttgcaagttttaattgattgcacaataagagtagtagttt |
34723428 |
T |
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