View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2646_high_15 (Length: 241)

Name: NF2646_high_15
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2646_high_15
NF2646_high_15
[»] chr5 (14 HSPs)
chr5 (19-225)||(3299487-3299693)
chr5 (19-225)||(3392380-3392586)
chr5 (95-225)||(1849919-1850049)
chr5 (95-225)||(1163690-1163817)
chr5 (92-225)||(39879768-39879898)
chr5 (92-225)||(40418237-40418367)
chr5 (92-225)||(38987659-38987789)
chr5 (92-225)||(39726372-39726502)
chr5 (92-225)||(39168800-39168930)
chr5 (92-225)||(39399813-39399943)
chr5 (26-73)||(40418404-40418451)
chr5 (32-73)||(38987826-38987867)
chr5 (32-73)||(39726545-39726586)
chr5 (32-73)||(39879941-39879982)
[»] chr4 (3 HSPs)
chr4 (92-225)||(25912292-25912422)
chr4 (98-164)||(44444772-44444838)
chr4 (26-73)||(25912205-25912252)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 3299693 - 3299487
Alignment:
Q  19 cattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtc 118  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299693 cattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtc 3299594  T
Q  119 accgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299593 accgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaa 3299494  T
Q  219 cgatatt 225  Q
    |||||||    
T  3299493 cgatatt 3299487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 3392586 - 3392380
Alignment:
Q  19 cattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtc 118  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392586 cattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtc 3392487  T
Q  119 accgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392486 accgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaa 3392387  T
Q  219 cgatatt 225  Q
    |||||||    
T  3392386 cgatatt 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 1850049 - 1849919
Alignment:
Q  95 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 194  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  195 cgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||| ||||||| ||||||||||||||    
T  1849949 cgagcaactatggcattagctaaacgatatt 1849919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 1163690 - 1163817
Alignment:
Q  95 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  195 cgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||| ||||||| ||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatatt 1163817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 39879898 - 39879768
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||||||||  |||||||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatatt 39879768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 40418367 - 40418237
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||||||||  ||||||||||||| |||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatatt 40418237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 38987789 - 38987659
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||||||||  |||||||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatatt 38987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 39726502 - 39726372
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||||||||  |||||||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatatt 39726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 39168930 - 39168800
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    ||||||||||||| |||||||||||| |||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatatt 39168800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 39399943 - 39399813
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    ||||||||||||| ||||||||||||||| ||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtatt 39399813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 40418451 - 40418404
Alignment:
Q  26 ctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40418451 ctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggtt 40418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 38987867 - 38987826
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  38987867 ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 38987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 39726586 - 39726545
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  39726586 ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 39879982 - 39879941
Alignment:
Q  32 ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  39879982 ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39879941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 25912292 - 25912422
Alignment:
Q  92 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 191  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  192 acacgagcaaccatggcatcagctaaacgatatt 225  Q
    |||||||||||||   ||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatatt 25912422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  98 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 164  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 25912205 - 25912252
Alignment:
Q  26 ctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 73  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  25912205 ctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggtt 25912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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