View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2646_high_3 (Length: 502)
Name: NF2646_high_3
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 44817604 - 44817132
Alignment:
| Q |
18 |
cacttggagcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtt |
117 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817604 |
cacttggagcggcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtt |
44817505 |
T |
|
| Q |
118 |
tccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817504 |
tccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaa |
44817405 |
T |
|
| Q |
218 |
ggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817404 |
ggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaa |
44817305 |
T |
|
| Q |
318 |
tatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44817304 |
tatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggc |
44817205 |
T |
|
| Q |
418 |
gtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
490 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44817204 |
gtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
44817132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 44834958 - 44834489
Alignment:
| Q |
18 |
cacttggagcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
44834958 |
cacttggagcagcagcatcattagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcattaacaagattgttagtgtt |
44834859 |
T |
|
| Q |
118 |
tccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaa |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| || |
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|
| T |
44834858 |
tccacttgagtattggcactgaggattattataaaactgaacccacacataatcaaataaaccggtattaatagccgaatccaaatgagcatcagggaaa |
44834759 |
T |
|
| Q |
218 |
ggacattgtggtgctgcagacaaataaactttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaa |
317 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || | ||||| ||||| |||| ||||||| ||||||| ||||| ||| || || |||||||||||| |
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|
| T |
44834758 |
ggacattgaggtgctgcagacaagtaaactctcctttgtgagctaaaaccattaagtgctcttgcaaggtcatc---atagtgttcaccaccagcttcaa |
44834662 |
T |
|
| Q |
318 |
tatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||| |
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|
| T |
44834661 |
tatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacctgcgtggc |
44834562 |
T |
|
| Q |
418 |
gtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagcaacactttgatgcctttgctt |
490 |
Q |
| |
|
|| | || ||| | |||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
44834561 |
atcatcagctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgctt |
44834489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 44838142 - 44838060
Alignment:
| Q |
313 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
395 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
44838142 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 44849229 - 44849147
Alignment:
| Q |
313 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttccata |
395 |
Q |
| |
|
|||||| |||||||| || ||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| ||||||||| |
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|
| T |
44849229 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 269 - 490
Target Start/End: Original strand, 17570951 - 17571172
Alignment:
| Q |
269 |
tcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
368 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17570951 |
tcaagtgcttttgcaagttcatcccaatgttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
17571050 |
T |
|
| Q |
369 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagag |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||| ||| ||| ||||| |||| |
|
|
| T |
17571051 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgccttcgataaagag |
17571150 |
T |
|
| Q |
469 |
caacactttgatgcctttgctt |
490 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17571151 |
caacactttgatgcctttgctt |
17571172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 29617190 - 29617421
Alignment:
| Q |
18 |
cacttggagcagcagcatacttagcaggtacacctaaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtt |
117 |
Q |
| |
|
|||||||||||| |||| || ||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
29617190 |
cacttggagcagaagcagcatttgcaggaacacataaaaacatttgtttagcttgacttgaagtgcattgattccaagcactaacaagattgttagtgtt |
29617289 |
T |
|
| Q |
118 |
tccacttgaatattggcactgaggattattataaaactgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaa |
217 |
Q |
| |
|
|||| |||| ||| | || |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| ||||| |||||| |
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|
| T |
29617290 |
tccatttgagtatcgacattgaggattattataaaactgaacccaaacataatcaaataaatcagtattaatagctgaattcaaataagcatttgggtaa |
29617389 |
T |
|
| Q |
218 |
ggacattgtggtgctgcagacaaataaacttt |
249 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |
|
|
| T |
29617390 |
gggcattgtggtgctgcagacaaatagacttt |
29617421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 53 - 325
Target Start/End: Original strand, 23396291 - 23396543
Alignment:
| Q |
53 |
aaaaacacttgtttagcttgacttgaagtccattgattccaagcatcaacaagattgttagtgtttccacttgaatattggcactgaggattattataaa |
152 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||| || |||||||||||||||| |
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|
| T |
23396291 |
aaaaaaacttgtttagcttgacttgaagtccattgatttcaagcattaacaagattgttagtgtttccatttgagtattgacattgaggattattataaa |
23396390 |
T |
|
| Q |
153 |
actgaacccacacataatcaaataaaccagtcttaatagctgaatccaaatgagcatcagggtaaggacattgtggtgctgcagacaaataaactttctt |
252 |
Q |
| |
|
| |||||| | |||||||| ||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||| |||||| | |||||||||| |
|
|
| T |
23396391 |
aatgaacctaaacataatctaataaaccagtattaatagctgaatccaaataagcataagagtaaggacattgtggcgctgcaaataaataaactt---- |
23396486 |
T |
|
| Q |
253 |
ctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaa |
325 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23396487 |
-tgtg---------------gtgcttttgcaagttcatcccaatattgaccatcaccaacttcaatatcaaaa |
23396543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 48222505 - 48222595
Alignment:
| Q |
301 |
accatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttc |
391 |
Q |
| |
|
|||| ||||| ||||||| |||||||| | |||||||| ||| ||||||||||||||||||| |||||| || || |||||||||||| |
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|
| T |
48222505 |
accaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttgattttgatgtccctcctaagaaattgttc |
48222595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 351
Target Start/End: Complemental strand, 47980246 - 47980207
Alignment:
| Q |
312 |
cttcaatatcaaaatcaattccatccaaaacagcatcacc |
351 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
47980246 |
cttcaatgtcaaaatcaatgccatccaaaacagcatcacc |
47980207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 43901341 - 43901261
Alignment:
| Q |
313 |
ttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaagaaattgttcca |
393 |
Q |
| |
|
|||||||||||||||||| ||||| || | |||||| || ||||| | ||||||||| | |||||||| || |||||||| |
|
|
| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttcca |
43901261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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