View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_high_4 (Length: 436)
Name: NF2646_high_4
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 44 - 428
Target Start/End: Complemental strand, 39603658 - 39603270
Alignment:
| Q |
44 |
gtttttgaggtgctgagtttttgctacacaaaatatatttataggatgtgtgtttatgtttatatttcc-ttatgtctattgtatgaattgtaaattgta |
142 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| || |||| | |||||||||||||||||||| ||||||||| |
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| T |
39603658 |
gtttttgaggtgctgagttttt-ctacacaaaatatatgtataggatgtgtgtttgtgtctacattttcattatgtctattgtatgaattataaattgta |
39603560 |
T |
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| Q |
143 |
gctttgaaacctatttatggaacaagaaatttgtgtttgattatatctactacttgaactccaaggtgattgaaacaattataaagttcaaggtgattga |
242 |
Q |
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|||||||||||||| ||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
39603559 |
gctttgaaacctatgtatggaacaagaattttgtgcttgcttatgtctactacttgaactccaaggtgattgaaacaattatcaagtttaaggtgattga |
39603460 |
T |
|
| Q |
243 |
aacaatcatgatttggatcttactttattggttttattttgtagatatggagtcttcatgttgtccacaacccaagatacca--cacac-ttcatctgct |
339 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||| || ||||||| |
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| T |
39603459 |
aacaatcatgatttagatcttacttatttgattttattttgtagatatggagttttcacgttgtccacaacccaagttaccatttccacttttatctgct |
39603360 |
T |
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| Q |
340 |
acctctaaggaagaaccaaaggtttcactagttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
428 |
Q |
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| T |
39603359 |
acctctaagggagaaccaaaggtttcactagttaatgacaaaatgatgaatataaaagaaatagcagatgagagaaaggttgtctctgct |
39603270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 209 - 423
Target Start/End: Complemental strand, 21827749 - 21827531
Alignment:
| Q |
209 |
tgattgaaacaattataaagttcaaggtgattgaaacaatcatgatttggatcttactttattggttttattttgtagatatggagtcttcatgttgtcc |
308 |
Q |
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| T |
21827749 |
tgattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttgtagatatggagtcttcatgttgtcc |
21827650 |
T |
|
| Q |
309 |
acaacccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggtttcactagttaatgaaggaatgacgaatatacaagaaatagca |
405 |
Q |
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|||| ||||| | ||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
21827649 |
acaatccaagttgccatttccaactttatctgctacctctaagggagaaccaaaggtttcactagttaatgacggaatgatgaatatacaagaaatagcg |
21827550 |
T |
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| Q |
406 |
gatg-gagaaaggttgtct |
423 |
Q |
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|||| ||||||| |||||| |
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| T |
21827549 |
gatgagagaaagcttgtct |
21827531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 21827905 - 21827774
Alignment:
| Q |
44 |
gtttttgaggtgctgagtttttgctacacaaaatatatttataggat----gtgtgtttatgtttatatttcctt-atgtctattgtatgaattgtaaat |
138 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| ||| || |||| ||| |||||||||||||||| ||||||| |
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| T |
21827905 |
gtttttgaggtgctgattttttgctacacaaaatatatgtataggatcgatgtgtgtttgtgtctacattttctttatgtctattgtatgaactgtaaat |
21827806 |
T |
|
| Q |
139 |
tgtagctttgaaacctatttatggaacaagaa |
170 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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| T |
21827805 |
tgtagctttgaaacctatgtatggaacaagaa |
21827774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 428
Target Start/End: Complemental strand, 43022320 - 43022162
Alignment:
| Q |
274 |
ttttattttgtagatatggagtcttcatgttgtccacaacccaagatacca----cacacttcatctgctacctctaaggaagaaccaaaggtttcacta |
369 |
Q |
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||||||||| ||||||||||||||| |||| ||||| |||||||||||| || ||||||||||||||||| |||| ||||||||||||||||| | |
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| T |
43022320 |
ttttattttccagatatggagtcttctcgttgcccacagcccaagataccatcttca-acttcatctgctacctccaagggagaaccaaaggtttcacaa |
43022222 |
T |
|
| Q |
370 |
gttaatgaaggaatgacgaatatacaagaaatagcagatg-gagaaaggttgtctctgct |
428 |
Q |
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|
||||||||||||||||| |||||||| |||||||| | || || ||||| |||||||||| |
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|
| T |
43022221 |
gttaatgaaggaatgacaaatatacaggaaatagctgctgagataaaggatgtctctgct |
43022162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 403
Target Start/End: Complemental strand, 42811940 - 42811808
Alignment:
| Q |
274 |
ttttattttgtagatatggagtcttcatgttgtccacaacccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggtttcactag |
370 |
Q |
| |
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||||||||| ||||||| |||||| |||| ||||| |||||||||||| | ||||||||||| ||||| |||| ||||||||||||||||| || |
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| T |
42811940 |
ttttattttccagatatgttgtcttctcgttgcccacagcccaagataccatctccaacttcatctgcaacctccaagggagaaccaaaggtttcacaag |
42811841 |
T |
|
| Q |
371 |
ttaatgaaggaatgacgaatatacaagaaatag |
403 |
Q |
| |
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|||||||||||||| | |||||||| ||||||| |
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| T |
42811840 |
ttaatgaaggaatggcaaatatacaggaaatag |
42811808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
| Q |
221 |
ttataaagttcaaggtgattgaaacaatcatgatttggatcttactt |
267 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42812035 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
42811989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
| Q |
221 |
ttataaagttcaaggtgattgaaacaatcatgatttggatcttactt |
267 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022414 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
43022368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 35060986 - 35060898
Alignment:
| Q |
274 |
ttttattttgtagatatggagtcttcatgttgtccacaacccaagatacca---cacacttcatctgctacctctaaggaagaaccaaa |
359 |
Q |
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|
||||||||| ||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||||| |||| ||||||||| |
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| T |
35060986 |
ttttattttccagatatggagtcttctcgttgcccacaacccaagataccatctccaacttcatctgctacctccaagggagaaccaaa |
35060898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 35061080 - 35061042
Alignment:
| Q |
226 |
aagttcaaggtgattgaaacaatcatgatttggatctta |
264 |
Q |
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| T |
35061080 |
aagttcaaggtgattgaaacaatcatgatttggatctta |
35061042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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