View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_high_6 (Length: 371)
Name: NF2646_high_6
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 24245936 - 24246287
Alignment:
| Q |
5 |
atgaagatgcatggatataccagctataaaaatgatagtcatgtagataccataaacaatttaagaaatttgaactaattgaatgtaatgtaaatgtcgt |
104 |
Q |
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| T |
24245936 |
atgaagatgcatggatataccagctataaaaatgatagtcatgtagataccataaacaatttaagaaatttgaactaattgaatgtgatgtaaatgtcgt |
24246035 |
T |
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| Q |
105 |
attagcgttggtttagggtttaaagtttaccgttgaaggcatgtcactgaatttgtgttcaatctgaagtgtcagtgctacatagttattttttaatcgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24246036 |
attagcgttggtttagggtttaaagtttaccgttaaaggcatgtcactgaatttgtgttcaatctgaagtgtcggtgctacatagttattttttaatcgg |
24246135 |
T |
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| Q |
205 |
ttgttttcaatcaatcgttccaatcaaagaaagttgctgccaccatggttaacctctacattgtaatttgtggttgtttcattttgtttgtgttagccat |
304 |
Q |
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| T |
24246136 |
ttgttttcaatcaatcgttccaatcaaagaaagttgctgccaccatggttaacctctacattgtaatttgtggttgtttcattttgtttgtgttagccat |
24246235 |
T |
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| Q |
305 |
ttataacttacgagtctagtttgtttgagattagtaaatgtgactttccttt |
356 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
24246236 |
ttatgacttacgagtctagtttgtttgagattagtcaatgtgacttttcttt |
24246287 |
T |
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