View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_high_7 (Length: 343)
Name: NF2646_high_7
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_high_7 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 35 - 326
Target Start/End: Original strand, 24479813 - 24480104
Alignment:
| Q |
35 |
tggttatacatacttgtaagaaagtacatatatttttagtttccttacggctggtttcctaagacctggtaatgtctcctttctcacttgacaaaaaagt |
134 |
Q |
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| T |
24479813 |
tggttatacatacttgtaagaaagtacatatatttttagtttccttactgctggcttcctaagacctggtaatgtctcctttctcacttgacaaaaaatt |
24479912 |
T |
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| Q |
135 |
aataatctatgaagcataaatatggtcactaatgacagtggacatcaataattatttnnnnnnntaaattaattaaatgtaattatatacgtcagttttt |
234 |
Q |
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| T |
24479913 |
aataatctatgaagcataaatatggtcactaatgacagtggacatcaataatcatttaaaaaaataaataaattaaatgtaattatatacgtcagttttt |
24480012 |
T |
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| Q |
235 |
attatatcagacactgaacacatcttgaatgaagcaatgttgcaaaccatacatgacataaggcgcttaaatgttaatcaaaaccattttca |
326 |
Q |
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| T |
24480013 |
attatatcagacaccgaacacatcttgaatgaagcaatgttgcaaaccatacatgacataaggcgcttaaatgttaatcaaaaccattttca |
24480104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 24467617 - 24467569
Alignment:
| Q |
102 |
ggtaatgtctcctttctcacttgacaaaaaagtaataatctatgaagca |
150 |
Q |
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| T |
24467617 |
ggtaatgtctcctttctcatttgtcaaaaaattaataatttatgaagca |
24467569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 1882 - 1834
Alignment:
| Q |
102 |
ggtaatgtctcctttctcacttgacaaaaaagtaataatctatgaagca |
150 |
Q |
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| T |
1882 |
ggtaatgtctcctttctcatttgtcaaaaaattaataatttatgaagca |
1834 |
T |
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