View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_11 (Length: 311)
Name: NF2646_low_11
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 26096628 - 26096346
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096628 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
26096529 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096528 |
taaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
26096429 |
T |
|
| Q |
218 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactttagcaagcacctat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096428 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactttagcaagcacctat |
26096346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 26084353 - 26084085
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084353 |
gttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
26084254 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
26084253 |
taaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgct |
26084154 |
T |
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| Q |
218 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| |
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| T |
26084153 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaactt |
26084085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 26119915 - 26119650
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
26119915 |
gttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaagacagtgaggaacaatgctaacctcag |
26119816 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26119815 |
taaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgct |
26119716 |
T |
|
| Q |
218 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |
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| T |
26119715 |
ctcaaaccttttcccgatggcacacctcgataaccttg---ttatgtctaagctgttgttcaaaaactt |
26119650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 26126572 - 26126304
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
26126572 |
gttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcag |
26126473 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
26126472 |
taaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgct |
26126373 |
T |
|
| Q |
218 |
ctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
286 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||| |||||| |||| |
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| T |
26126372 |
ctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatactt |
26126304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 91 - 284
Target Start/End: Complemental strand, 26075686 - 26075493
Alignment:
| Q |
91 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26075686 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaa |
26075587 |
T |
|
| Q |
191 |
tattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaac |
284 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |
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|
| T |
26075586 |
tattatgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaac |
26075493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26064628 - 26064408
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
26064628 |
gttatgacgggcttcatgctgctaaaaggactatggatatgtacctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcag |
26064529 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26064528 |
taaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgct |
26064429 |
T |
|
| Q |
218 |
ctcaaaccttttcccgatggc |
238 |
Q |
| |
|
||||||||||| || |||||| |
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|
| T |
26064428 |
ctcaaacctttccctgatggc |
26064408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26035980 - 26035770
Alignment:
| Q |
18 |
gttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaacgatgctaacctcag |
117 |
Q |
| |
|
||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26035980 |
gttatgaagggcttcatgctgctagaagaactatggatatgtatctctttatgaacagcaaagttcttttcaagacagtgaggaacgatgctaacctcag |
26035881 |
T |
|
| Q |
118 |
taaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgct |
217 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
26035880 |
taaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaagatgct |
26035781 |
T |
|
| Q |
218 |
ctcaaaccttt |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
26035780 |
ctcaaaccttt |
26035770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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