View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_12 (Length: 306)
Name: NF2646_low_12
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 33520138 - 33519833
Alignment:
| Q |
1 |
ctacaatattctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgtttattacaatc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33520138 |
ctacaatcttctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgttcattacaatc |
33520039 |
T |
|
| Q |
101 |
ataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttcaaatgttatcagtgacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33520038 |
ataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttcaaatgttatcagtgacag |
33519939 |
T |
|
| Q |
201 |
ttgtaaattgaccactaatatcacaatttaataaataatagccattcctcaatctttnnnnnnntccattatcaaacattaattgacaaattacttacaa |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33519938 |
ttgtaaattgaccactaatgtcacaatttaataaataatagccattcctcaatctttaaaaaaatccattatcaaacattaattgacaaattacttacaa |
33519839 |
T |
|
| Q |
301 |
gttata |
306 |
Q |
| |
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|||||| |
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| T |
33519838 |
gttata |
33519833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 33495917 - 33496220
Alignment:
| Q |
1 |
ctacaatattctccatgccctttggaactacaaagaaccatttcattcctgtctgcacaaaataaaggaaatcatatcaatatttatgtttattacaatc |
100 |
Q |
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||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| | ||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
33495917 |
ctacaatcttctccatgccctttggaaccacaaagaaccttggcattcctgtctgctctaaacaaaagaaatcatatcaatatttatgttcattacaatc |
33496016 |
T |
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| Q |
101 |
ataaccgattatcaaataattgttcatgaggtctcagcatactggtaagagccagaccgtgtaatctcaaggcataaagttcaaatgttatcagtgacag |
200 |
Q |
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||||||||||||||||||||||||||||| | | ||| | ||||||||| |||||||||| |||||| ||| |||||||||| |||||| |||||| |
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| T |
33496017 |
gtaaccgattatcaaataattgttcatgagatgtaagctcaacggtaagagcttgaccgtgtaacctcaagacatgaagttcaaatcttatcaatgacag |
33496116 |
T |
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| Q |
201 |
ttgtaaattgaccactaatatcacaatttaataaataatagccattcctcaatctttnnnnnnntccattatcaaacattaattgacaaattacttacaa |
300 |
Q |
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||||||| |||| | || | |||| |||| ||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
33496117 |
ttgtaaaatgacaattagtgtcac--tttactaaataatattcattctccaatccttaaaaaaatccattatcaaacattaattgacaaattacttgcaa |
33496214 |
T |
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| Q |
301 |
gttata |
306 |
Q |
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|||||| |
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| T |
33496215 |
gttata |
33496220 |
T |
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