View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_13 (Length: 282)
Name: NF2646_low_13
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 24479460 - 24479705
Alignment:
| Q |
15 |
aattttagtgaaatggtagctaattattttaaaatttactaccattatattctgtagcacaattatggtagaaattcttattttcttgtggtgcaagtta |
114 |
Q |
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| T |
24479460 |
aattttagtgaaatggtagctaattattttaaaatttactaccattatattctgtagcacaattatggtagaaattcttattttcttgtagtgcaagtta |
24479559 |
T |
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| Q |
115 |
gttgcatgttttttcttgaaaggaatttg---tannnnnnnnaac-taatgaatgaaagttagttgcaacatatatattagtcacggtatctcacctcat |
210 |
Q |
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| T |
24479560 |
gttgcaagttttttcttgaaaggaatttgttattttttttttaacttaatgaatgaaagttagttgcaacatatatattagtcacggtatctcacctcat |
24479659 |
T |
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| Q |
211 |
tcttttaatcatatttc-ttgtttttgtctcccgttaaagtattcc |
255 |
Q |
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| T |
24479660 |
tcttttaatcatatttctttgtttttgtttcccgttaaagtattcc |
24479705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 8025896 - 8025967
Alignment:
| Q |
15 |
aattttagtgaaatggtagctaa-ttattttaaaatttactaccattatattctgtagcacaattatggtag |
85 |
Q |
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| T |
8025896 |
aatttcagggaaatggtagttaaattatattcatatttactaccattacattttgtagcacaattatggtag |
8025967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 31105479 - 31105433
Alignment:
| Q |
15 |
aattttagtgaaatggtagctaattattttaaaatttactaccatta |
61 |
Q |
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| T |
31105479 |
aatttcagtgaaatggtagctaattattttgatatttactaccatta |
31105433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 44255362 - 44255297
Alignment:
| Q |
29 |
ggtagctaattattttaaaatttactaccattatattctgtagcacaattatggtagaaattctta |
94 |
Q |
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| T |
44255362 |
ggtagttaattattttgatatttactaccattttattttgtagcacagttatggtagcaaatctta |
44255297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 9758210 - 9758161
Alignment:
| Q |
15 |
aattttagtgaaatggtagctaattattttaaaatttactaccattatat |
64 |
Q |
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| T |
9758210 |
aatttcagtcaaatggtagctaattattttgatatctactaccattatat |
9758161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 3309065 - 3309123
Alignment:
| Q |
15 |
aattttagtgaaatggtagctaattattttaaaatttactaccattatattctgtagca |
73 |
Q |
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| T |
3309065 |
aatttaagtcaaatggtagctaattattttgatatttgctaccattacattatgtagca |
3309123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 15209551 - 15209482
Alignment:
| Q |
25 |
aaatggtagctaattattttaaaatttactaccattatattctgtagcacaattatggtagaaattctta |
94 |
Q |
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| T |
15209551 |
aaatggtagctaattgttttaatattcactaccaatatatttcctagcacagttatggtagcaaatctta |
15209482 |
T |
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