View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_14 (Length: 250)
Name: NF2646_low_14
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2563729 - 2563973
Alignment:
| Q |
1 |
acaaacttgttgtatgtaccagatctgtctctagagtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563729 |
acaaacttgttgtatgtaccagatctgtctctagagtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaag |
2563828 |
T |
|
| Q |
101 |
tctgaatagaacattttatgttcataaattcaaatatatgcagaagaagatagttcggcagatcactgagtctgtctgcgttgttaccgtcttgtatatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563829 |
tctgaatagaacattttatgttcataaattcaaatatatgcagaagaagatggttcggcagatcactgagtctgtctgcgttgttaccgtcttgtatatc |
2563928 |
T |
|
| Q |
201 |
cgtttcactttggcttttcatcttcaacaatactcctttgcttct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2563929 |
tgtttcactttggcttttcatcttcaacaatactcctttgtttct |
2563973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 34800464 - 34800576
Alignment:
| Q |
34 |
gagtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaa |
133 |
Q |
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|||||||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
34800464 |
gagtgatgcaacgtgagattagcgagacttttccaaaggctcttccatcgtttagacaaaacacaagtctgaacagattgctttatattcataaattcaa |
34800563 |
T |
|
| Q |
134 |
atatatgcagaag |
146 |
Q |
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|||||||||||| |
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| T |
34800564 |
ttatatgcagaag |
34800576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 34776534 - 34776644
Alignment:
| Q |
36 |
gtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaat |
135 |
Q |
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|||||| ||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||| ||| | |||| ||||||||||||| | |
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| T |
34776534 |
gtgatgcaacttgagattagtgagacttttccaaacgttcttccatcgtttagacaaaacacaagtccgaacagattgtcttatattcataaattcaatt |
34776633 |
T |
|
| Q |
136 |
atatgcagaag |
146 |
Q |
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||||||||||| |
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| T |
34776634 |
atatgcagaag |
34776644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 24985813 - 24985676
Alignment:
| Q |
34 |
gagtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaa |
133 |
Q |
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|||||| ||||| ||||||||||| || ||||||||||||||||||| ||||||||||| || || ||||||| ||| ||| ||||||||||||||| |
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| T |
24985813 |
gagtgaagaaacttgagattagtgcgatttttccaaaggtccttccatcgtttagacaagacgcatgtctgaacagattgtttagtgttcataaattcaa |
24985714 |
T |
|
| Q |
134 |
atatatgcagaagaagatagttcggcagatcactgagt |
171 |
Q |
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|||||||| ||| |||| || ||||| ||||||||| |
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| T |
24985713 |
ttatatgcaaaagcagatggtcaggcaggtcactgagt |
24985676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 23273502 - 23273646
Alignment:
| Q |
34 |
gagtgatgaaacgtgagattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaa |
133 |
Q |
| |
|
|||||||| ||| | |||||||||||| ||||||||||| |||||| |||||||||| ||| |||||||||| ||| |||||||||||||||||||| |
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| T |
23273502 |
gagtgatgcaactttagattagtgagatgtttccaaaggttcttccatcgtttagacagaacgcaagtctgaacagattgttttatgttcataaattcaa |
23273601 |
T |
|
| Q |
134 |
atatatgcagaagaagatagttcggcagatcactgagtctgtctg |
178 |
Q |
| |
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||||| ||||| | || || || || |||||||||||||||| |
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| T |
23273602 |
tgatatgaagaaggacatggtcaggaaggtcactgagtctgtctg |
23273646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 23410745 - 23410616
Alignment:
| Q |
49 |
agattagtgagacttttccaaaggtccttccaacgtttagacaaaacacaagtctgaatagaacattttatgttcataaattcaaatatatgcagaagaa |
148 |
Q |
| |
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||||| |||||| |||||||||||||||||| |||||||||| ||| || ||||||| ||| ||||||||||||| |||||| ||||| ||||| | |
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| T |
23410745 |
agattggtgagatgtttccaaaggtccttccatcgtttagacagaacgcaggtctgaacagattgttttatgttcatagattcaatgatatgaagaagga |
23410646 |
T |
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| Q |
149 |
gatagttcggcagatcactgagtctgtctg |
178 |
Q |
| |
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|| || || || |||||||||||||||| |
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| T |
23410645 |
catggtcaggaaggtcactgagtctgtctg |
23410616 |
T |
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