View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_15 (Length: 248)
Name: NF2646_low_15
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2563695 - 2563465
Alignment:
| Q |
1 |
tccgcttcataagttaatatattttccactaacatcaaaaaagaaaataagatattttcttcaagattcctcaaattcctcaaaaactacactcctagag |
100 |
Q |
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| T |
2563695 |
tccgcttcataagttaatatattttccactaacatcaaaaaagaaaataagatattttcttcaagattcctcaaattcctcaaaaactacactcctagag |
2563596 |
T |
|
| Q |
101 |
gtcatgaaatatgctgcttcacataatgtcgaggaactcacaacctatgctggcccatggcgcataaaggattttgaattgcctcattccatctttcatt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
2563595 |
gtcatgaagtatgctgcttcacataatgtcgaggaactcacaacctatgctggcccatggctcataaagaattttgaattgcctcattccatctttcatt |
2563496 |
T |
|
| Q |
201 |
gtcattctttgacatctcttaagcttgactt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2563495 |
gtcattctttgacatctcttaagcttgactt |
2563465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 34800264 - 34800197
Alignment:
| Q |
164 |
ataaaggattttgaattgcctcattccatctttcattgtcattctttgacatctcttaagcttgactt |
231 |
Q |
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| T |
34800264 |
ataaaagatcttgaatttcccccttccatttttaattctcattctttgacatttcttaagcttgactt |
34800197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 34800345 - 34800299
Alignment:
| Q |
83 |
aaaactacactcctagaggtcatgaaatatgctgcttcacataatgt |
129 |
Q |
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| T |
34800345 |
aaaaccacactcttagaggtcatggaatatgctgcgtcacataatgt |
34800299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 23273383 - 23273349
Alignment:
| Q |
83 |
aaaactacactcctagaggtcatgaaatatgctgc |
117 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
23273383 |
aaaactacactcctagaggtcatgagatatgctgc |
23273349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 23410882 - 23410916
Alignment:
| Q |
83 |
aaaactacactcctagaggtcatgaaatatgctgc |
117 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
23410882 |
aaaactacactcctagaggtcatgagatatgctgc |
23410916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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