View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_16 (Length: 242)
Name: NF2646_low_16
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1911243 - 1911024
Alignment:
| Q |
1 |
cattttttattacaagatcactaataatctatttatataattaatgttttttaaaaatcattttgctagatatcaaagaaaggctatttaattacaacgg |
100 |
Q |
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| T |
1911243 |
cattttttattacaagatcactaataatctatttatataattaatattttttaaaaatcattttgctagatatcaaagaaaggctatttaattacaacgg |
1911144 |
T |
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| Q |
101 |
aatataccaatagttaaattatctcnnnnnnnnatcaacaatattacaaaattacgagatacaaccaacacaaactataccaacaattaaaaacgaaaag |
200 |
Q |
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| T |
1911143 |
aatataccaatagttaaattatctc-tttttttatcaacaatattacaaaattacgagatacaaccaacacaaactatac---caatt-----cataaag |
1911053 |
T |
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| Q |
201 |
ctataaataaggacacctcaattttgatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1911052 |
ctataaataaggacacctcaattttgatg |
1911024 |
T |
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