View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_2 (Length: 544)
Name: NF2646_low_2
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 34 - 528
Target Start/End: Original strand, 34044563 - 34045056
Alignment:
| Q |
34 |
cataggtcaataggctaaggagtaagggacttaaaacgacactacaaattttgattaacacaggatatgttaaataataatagaataattttcctttttc |
133 |
Q |
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| T |
34044563 |
cataggtcaataggctaaggggtaagggacttaaaacaacactacaaattttgattaacacaggatatgttaaataataatagaataattttccttctt- |
34044661 |
T |
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| Q |
134 |
aaaaaagctgcaaatgcaaaataataggtttgtgtcactgctgctagggtaccgcagataaaatcaataaggaaatataaatataatcaatagacacgtt |
233 |
Q |
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| T |
34044662 |
aaaaaagctgcaaatgcaaaataataggtttgtgtcactgctgctagggtaccgcagataaaatcaataaggaaatataaatataatcaatagacacgtt |
34044761 |
T |
|
| Q |
234 |
taaaaattatgaaaatattgtcaaccattgtagcaccgacacttgatatcgaaatgacaatgacacttgtggttacattcaattatgtaattttcgtaaa |
333 |
Q |
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| T |
34044762 |
taaaaattatgaaaatattgtcaaccattgtagcacggacacttgatatcgaaatgacaatgacacttgtggttacattcaattatgtaattttcgtaaa |
34044861 |
T |
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| Q |
334 |
ttactgttagtgccagtggagtcgatgcttcacggctgtccacgttagggaacatattaagtgatggaaatccctaatgtttatttcatccctaacttta |
433 |
Q |
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| T |
34044862 |
ttactgttagtgccagtggagtcgatgcttcacggctgtccacgttagggaacatattaagtgatggaaatccctaatgtttatttcatccctaacttta |
34044961 |
T |
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| Q |
434 |
ccatttagtttgataataaattgatcataactaacaacttaacaactcttaaaccatccagatttccaactttaccaataactttacatgaaggt |
528 |
Q |
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| T |
34044962 |
ccatttagtttgataataaattgatcataactaacaacttaacaactcttaaaccatccagatttccaactttaccaataactttacatgaaggt |
34045056 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 32691796 - 32691752
Alignment:
| Q |
294 |
tgacacttgtggttacattcaattatgtaattttcgtaaattact |
338 |
Q |
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|||||| |||| |||||||||||||||| |||||| ||||||||| |
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| T |
32691796 |
tgacacatgtgattacattcaattatgtcattttcttaaattact |
32691752 |
T |
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