View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_21 (Length: 204)
Name: NF2646_low_21
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 2885053 - 2885238
Alignment:
| Q |
1 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2885053 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgctaagcttcctagtttctacaagcaaagagacc |
2885152 |
T |
|
| Q |
101 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtt |
186 |
Q |
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| T |
2885153 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtt |
2885238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2899478 - 2899293
Alignment:
| Q |
1 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
100 |
Q |
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|||||| |||||||| |||| |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899478 |
ggtgctatatttttctcagtggttatgcttatgtttaatggattggctgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
2899379 |
T |
|
| Q |
101 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttgctgcttgggtt |
186 |
Q |
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| T |
2899378 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacatttctggaagttgctgtttgggtt |
2899293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 44212692 - 44212538
Alignment:
| Q |
1 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
100 |
Q |
| |
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|||||||| |||||| || |||| | ||| ||||||||||||||| | || |||| ||||||||||| ||||||||| || |||||||||| |||||| |
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| T |
44212692 |
ggtgctttgtttttcacactagtaacgatgatgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagacc |
44212593 |
T |
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| Q |
101 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcc |
155 |
Q |
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|||| |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |
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| T |
44212592 |
ttctattttatccctcatgggcatatgctattccttcatggattctcaagattcc |
44212538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 44224858 - 44224704
Alignment:
| Q |
1 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
100 |
Q |
| |
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|||||||| |||||| || |||| | ||| ||||||||||||||| | || |||| ||||||||||| ||||||||| || |||||||||| |||||| |
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| T |
44224858 |
ggtgctttgtttttcacactagtaacgatgatgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagacc |
44224759 |
T |
|
| Q |
101 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcc |
155 |
Q |
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|
|||| |||| ||| ||||||||||||||||| ||| | ||||| ||||||||||| |
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| T |
44224758 |
ttctattttatccctcatgggcatatgctattccttcgtggattctcaagattcc |
44224704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 44235668 - 44235514
Alignment:
| Q |
1 |
ggtgctttatttttcgcagtagttatgattatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagacc |
100 |
Q |
| |
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|||||||| |||||| || | || | ||| ||||||||||||||| | || |||| ||||||||||| ||||||||| || |||||||||| |||||| |
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| T |
44235668 |
ggtgctttgtttttcacactggtaacgatgatgtttaatggaatgtctgagatttctatgaccattgctaagcttcctgtttactacaagcaacgagacc |
44235569 |
T |
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| Q |
101 |
ttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcc |
155 |
Q |
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|||| |||| ||| ||||||||||||||||| ||| | ||||| ||||||||||| |
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| T |
44235568 |
ttctattttatccctcatgggcatatgctattccttcgtggattctcaagattcc |
44235514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 49771134 - 49771228
Alignment:
| Q |
81 |
tttctacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcctcaagattcctattacctttctggaagttg |
175 |
Q |
| |
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|||||| |||||||| ||||||||| |||| ||| | ||||||||| || | ||||| |||||||| ||||||||||| |||||| | ||||||| |
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| T |
49771134 |
tttctataagcaaagggaccttctgcttttccctgcttgggcatattctttgcctacttggatccttaagattcctataacctttgtagaagttg |
49771228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 39576636 - 39576519
Alignment:
| Q |
29 |
ttatgtttaatggaatggccgaactttcaatgaccattgcgaagcttcctagtttctacaagcaaagagaccttctgttttttccttcatgggcatatgc |
128 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||| ||| || |||||| || |||||||||||||||||||| || | ||||| |||||||||| |
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| T |
39576636 |
ttatgtttaatggatttgctgaactttcaatgaccgttgtgaggcttcccgtgttttacaagcaaagagaccttctcttctacccttcttgggcatatgg |
39576537 |
T |
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| Q |
129 |
tatacctacatggatcct |
146 |
Q |
| |
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| | ||| |||||||||| |
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| T |
39576536 |
tcttccttcatggatcct |
39576519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 39623534 - 39623473
Alignment:
| Q |
85 |
tacaagcaaagagaccttctgttttttccttcatgggcatatgctatacctacatggatcct |
146 |
Q |
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||||||||||| ||| | || |||||||||||||||||||||||| | ||| |||||||||| |
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| T |
39623534 |
tacaagcaaagggacttactcttttttccttcatgggcatatgctcttcctgcatggatcct |
39623473 |
T |
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