View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2646_low_3 (Length: 513)

Name: NF2646_low_3
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2646_low_3
NF2646_low_3
[»] chr3 (16 HSPs)
chr3 (164-443)||(8431406-8431686)
chr3 (300-443)||(43073034-43073178)
chr3 (297-443)||(31525360-31525507)
chr3 (306-443)||(28934724-28934861)
chr3 (300-437)||(10454279-10454422)
chr3 (291-427)||(44656229-44656369)
chr3 (300-419)||(47820897-47821022)
chr3 (300-437)||(9358743-9358883)
chr3 (306-443)||(52076066-52076209)
chr3 (300-423)||(53349401-53349527)
chr3 (306-443)||(20701152-20701292)
chr3 (306-430)||(28956952-28957079)
chr3 (306-437)||(42881885-42882019)
chr3 (300-419)||(46750212-46750333)
chr3 (300-359)||(55166895-55166955)
chr3 (485-513)||(48531600-48531628)
[»] chr1 (14 HSPs)
chr1 (222-427)||(31833817-31834019)
chr1 (297-442)||(12172951-12173097)
chr1 (212-443)||(19472716-19472944)
chr1 (300-418)||(46757306-46757425)
chr1 (300-437)||(26990601-26990739)
chr1 (306-443)||(8462958-8463097)
chr1 (300-419)||(42442019-42442142)
chr1 (300-437)||(47028931-47029072)
chr1 (300-443)||(38548673-38548821)
chr1 (306-425)||(41955891-41956016)
chr1 (300-390)||(43268645-43268739)
chr1 (300-437)||(26384960-26385100)
chr1 (306-443)||(28447722-28447863)
chr1 (301-442)||(43460698-43460848)
[»] chr7 (14 HSPs)
chr7 (300-437)||(46691839-46691981)
chr7 (306-443)||(30655586-30655727)
chr7 (306-443)||(22197675-22197816)
chr7 (306-443)||(22240005-22240146)
chr7 (306-426)||(36615808-36615927)
chr7 (297-442)||(31424761-31424912)
chr7 (306-443)||(1039051-1039191)
chr7 (306-419)||(49035865-49035983)
chr7 (303-425)||(41702867-41702992)
chr7 (306-415)||(33320710-33320817)
chr7 (212-266)||(30655761-30655815)
chr7 (297-437)||(32678937-32679083)
chr7 (366-443)||(42598053-42598130)
chr7 (300-437)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (294-430)||(38908663-38908800)
chr2 (300-427)||(41419617-41419748)
chr2 (300-437)||(14732334-14732473)
chr2 (300-418)||(41378216-41378332)
chr2 (306-443)||(22649053-22649193)
chr2 (366-419)||(43356750-43356803)
[»] chr8 (13 HSPs)
chr8 (300-443)||(40930818-40930961)
chr8 (307-443)||(13959207-13959347)
chr8 (300-439)||(24200614-24200753)
chr8 (300-437)||(25829259-25829399)
chr8 (300-444)||(5200469-5200615)
chr8 (300-436)||(22839250-22839391)
chr8 (300-443)||(38086402-38086551)
chr8 (306-373)||(10124866-10124935)
chr8 (300-443)||(30836116-30836272)
chr8 (394-443)||(7845135-7845184)
chr8 (366-442)||(44362918-44362994)
chr8 (379-443)||(584123-584187)
chr8 (300-359)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (306-427)||(16572074-16572198)
chr4 (308-442)||(47571560-47571694)
chr4 (300-443)||(32183275-32183425)
chr4 (341-437)||(15186975-15187072)
chr4 (303-437)||(55133102-55133233)
chr4 (300-437)||(25641263-25641407)
chr4 (299-437)||(16662301-16662441)
chr4 (301-437)||(42390766-42390906)
chr4 (443-509)||(5341706-5341772)
chr4 (443-503)||(25222218-25222278)
chr4 (393-443)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (300-419)||(23172985-23173107)
chr5 (300-425)||(22887211-22887337)
chr5 (300-443)||(9931785-9931935)
chr5 (291-425)||(25539810-25539947)
chr5 (306-443)||(10431063-10431204)
chr5 (306-426)||(819134-819254)
chr5 (300-442)||(3677779-3677924)
chr5 (315-443)||(42241577-42241708)
chr5 (306-358)||(2292168-2292222)
chr5 (385-443)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (306-443)||(33112703-33112844)
chr6 (300-437)||(10246910-10247049)
chr6 (212-444)||(11546685-11546912)
chr6 (299-434)||(6575720-6575860)
chr6 (300-442)||(15859093-15859244)
chr6 (212-443)||(34761080-34761306)
chr6 (300-359)||(33984753-33984814)
chr6 (385-428)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (379-443)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (385-441)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 164 - 443
Target Start/End: Complemental strand, 8431686 - 8431406
Alignment:
Q  164 ggttgctgctgtctttttggtgtggtgctgcagttttggctgttatgagtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtca 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431686 ggttgctgctgtctttttggtgtggtgctgtagttttggctgttatgagtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtca 8431587  T
Q  264 ttatttttgt-gtccggtagttagtgccttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgt 362  Q
    || ||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8431586 tttttttttttgaccggtagttagtgccttagtgttggggtggtttttaaggggtttttgttcgagccggtgttttgttgcaaccgatttccccttgtgt 8431487  T
Q  363 ttattttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||    
T  8431486 ttattttttccatccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccgtttcaaaaaaaaaaa 8431406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 43073178 - 43073034
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgc 398  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || | ||||||||| || ||||| ||||||||||||||    
T  43073178 gggtggtttttaaggggtttttgttcgagccggtgttttaaggcaaccgatttccccttgtattcttttttttccacccaagcttattagtgcatcttgc 43073079  T
Q  399 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||| |||||||||||| |||||||| |||||||| |||||    
T  43073078 acgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 43073034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 31525360 - 31525507
Alignment:
Q  297 ttagggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  31525360 ttagggtggtttttaaggggtttttgttcgagccgttgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 31525459  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  31525460 tgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 31525507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 28934861 - 28934724
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggc 404  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||| |||| |||||||| ||||||| ||||||||||||    
T  28934861 tttttaaggggtttttgttcgagccggtgttt-gtggcaaccgatttccccttgttttgttttttctccacccgagcttattagtgcttcttgcacgggc 28934763  T
Q  405 ttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    || |||||||||||| ||||||   |||||||| |||||    
T  28934762 ttgttggttaataatattttgctaattcaaaaaaaaaaa 28934724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 10454279 - 10454422
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt-----ccatccgagcttgttagtgcat 393  Q
    ||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||||| | ||||||||     ||| |||||||| |||||||      
T  10454279 gggtggtttttaaggggtttttgtttgagccggctttcttgtggcaaccgatttccccttgtatgtattttttttttcccacccgagcttattagtgctc 10454378  T
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  10454379 cttgcacgggcttgttggttaataatattttgccatttcaaaaa 10454422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 44656369 - 44656229
Alignment:
Q  291 ttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgt---gtttattttt-tccatccgagcttgtt 386  Q
    ||||| ||||||||||||||||||| |||||||||||| | ||||| | ||||||||||||| |||||||   |||| ||||| |||| |||||||| ||    
T  44656369 ttagttttagggtggtttttaagggatttttgttcgagtctgtgttatatggcaaccgattttcccttgtatggtttttttttctccacccgagcttatt 44656270  T
Q  387 agtgcatcttgcacgggcttcttggttaataattttttgcc 427  Q
     ||||||||||||||||||| |||||||||||| |||||||    
T  44656269 tgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 47820897 - 47821022
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 393  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| | | ||||||||    ||| |||||||| ||||||| |    
T  47820897 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgtatttttttcctccacccgagcttattagtgcgt 47820996  T
Q  394 cttgcacgggcttcttggttaataat 419  Q
    ||||||||||||| ||||||||||||    
T  47820997 cttgcacgggcttgttggttaataat 47821022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 9358883 - 9358743
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatctt 396  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| | | || |||| |||| || ||||| ||||| | |||     
T  9358883 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctatgtttttttctccacccaagcttattagtacttctc 9358784  T
Q  397 gcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||| |||| ||||||| |||||||| ||||||||    
T  9358783 gcacgggcttgttgggtaataatattttgccgattcaaaaa 9358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 52076066 - 52076209
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt------tccatccgagcttgttagtgcatcttgca 399  Q
    ||||||||||||||||||||||||   |||||| |||||||||||| |||||||| | |||||||      |||| |||||||| ||||||| ||| |||    
T  52076066 tttttaaggggtttttgttcgagcgtttgttttatggcaaccgattaccccttgtttgtattttttttttctccacccgagcttattagtgcttctcgca 52076165  T
Q  400 cgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||||| ||||||| |||| |||||||| |||||||| |||||    
T  52076166 cgggcttgttggttagtaatattttgccgattcaaaaaaaaaaa 52076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 53349401 - 53349527
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatctt 396  Q
    ||||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||  |||||| |||| ||| || || || ||||||| ||||    
T  53349401 gggtggtttttaaggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtatgtttaattttcccacccaagtttattagtgcttctt 53349500  T
Q  397 gcacgggcttcttggttaataattttt 423  Q
    ||| | |||| ||||||||||||||||    
T  53349501 gcatgagcttgttggttaataattttt 53349527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 20701152 - 20701292
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatcttgcacgg 402  Q
    ||||||||||||||||||||||||||  ||| |||||||| |||||||||||||| | |||||||   | || |||||||| ||||||| ||||| ||||    
T  20701152 tttttaaggggtttttgttcgagccgtagttgtgtggcaatcgatttccccttgtttgtatttttttcttcacccgagcttattagtgcttcttgtacgg 20701251  T
Q  403 gcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||  |||||||||||| |||||| | || ||||| |||||    
T  20701252 gctcgttggttaataatattttgctgatttaaaaaaaaaaa 20701292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 28956952 - 28957079
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtgcatcttgcacgg 402  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||||  || |||||||| | ||||  ||||||||||    
T  28956952 ttttaaaggggtttttgttcgagccggtgtttgtgtggcaaccgatttccccttctttgtttttttttctcacccgagcttatcagtgtttcttgcacgg 28957051  T
Q  403 gcttcttggttaataattttttgccgtt 430  Q
     ||| |||||||||||| ||||| ||||    
T  28957052 acttgttggttaataatattttgtcgtt 28957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 42881885 - 42882019
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg----tgtttattttttccatccgagcttgttagtgcatcttgcacg 401  Q
    ||||||||| ||||||||| |||||||||| ||||||||| |||||||||||||    ||| | ||||||||  |||||||| ||||||||||||| |||    
T  42881885 tttttaaggcgtttttgtttgagccggtgtattgtggcaatcgatttccccttgtatttgtgttttttttcctcccgagctttttagtgcatcttgtacg 42881984  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaa 437  Q
     |||| |||| ||||||| |||||||| || |||||    
T  42881985 agcttgttgg-taataatattttgccgatttaaaaa 42882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 46750212 - 46750333
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc---catccgagcttgttagtgcatctt 396  Q
    |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| || |||| |||  ||||||   || |||||||| ||||||||||||    
T  46750212 gggtggtttttaaggg-tttttgttcgaaccggtgttttgcggcaaccgattttcctttgtattttctttttctttcacccgagcttattagtgcatctt 46750310  T
Q  397 gcacgggcttcttggttaataat 419  Q
    | || |  || ||||||||||||    
T  46750311 gtacagatttgttggttaataat 46750333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 55166955 - 55166895
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 359  Q
    |||||||||||||||||||||||||||||||   |||| || |||||||||||||||||||    
T  55166955 gggtggtttttaaggggtttttgttcgagccaaagtttgtgcggcaaccgatttccccttg 55166895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 513
Target Start/End: Original strand, 48531600 - 48531628
Alignment:
Q  485 accaacaccacttcctctcaatctcattc 513  Q
    |||||||||||||||||||||||||||||    
T  48531600 accaacaccacttcctctcaatctcattc 48531628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 222 - 427
Target Start/End: Original strand, 31833817 - 31834019
Alignment:
Q  222 aggggtatgcttgcggattgtcatttgtatatgtctgcgtcattatttttgtgtccggtagttagtgccttagtgttagggtggtttttaaggggttttt 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||    
T  31833817 aggggtatgcttgcggattgccatttgtatatgtctgcgtcattacttttgtgactggtagtttgtgccttagtgttggggtggtttttaaggggttttt 31833916  T
Q  322 gttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattt 421  Q
    ||||||||||||||| ||||||||||||||| ||||||| |   |||||| || |||||||||||||||||||||||||||  || |||||||||||| |    
T  31833917 gttcgagccggtgttatgtggcaaccgattttcccttgtat---tttttttcacccgagcttgttagtgcatcttgcacggatttgttggttaataatat 31834013  T
Q  422 tttgcc 427  Q
    ||||||    
T  31834014 tttgcc 31834019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 297 - 442
Target Start/End: Original strand, 12172951 - 12173097
Alignment:
Q  297 ttagggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  12172951 ttagggtggtttttaaggggtttttgttcgagctgatgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 12173050  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 442  Q
    ||||||||||| |||||||||||| |||||||| |||||||| ||||    
T  12173051 tgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaa 12173097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 212 - 443
Target Start/End: Original strand, 19472716 - 19472944
Alignment:
Q  212 gtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtcattatttttgtgtccggtagttagtgccttagtgttagggtggttttta 311  Q
    ||||||||||||||||||||||| ||  ||||| ||||||||| ||||||||||| | |||||       ||  || ||||||| |  ||||||||||||    
T  19472716 gtgttgatgcaggggtatgcttgtggtctgtcacttgtatatgcctgcgtcattactcttgtg-------gtgtgttccttagtttatgggtggttttta 19472808  T
Q  312 agggg-tttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatcttgcacgggcttc 407  Q
    | ||| |||||||||||||||| |||| | ||||||| ||||||||||| | | |||||||||  || |||||||| ||||||| ||||||||||||||     
T  19472809 aagggatttttgttcgagccggagtttgtatggcaactgatttccccttctttgtattttttctccacccgagcttattagtgcgtcttgcacgggcttg 19472908  T
Q  408 ttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||||||| |||||||| |||||||| |||||    
T  19472909 ttggttaataatattttgccgattcaaaaaaaaaaa 19472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 46757306 - 46757425
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 398  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||||| | ||  ||||||||| | |||||| ||||||||||||||    
T  46757306 gggtggtttttaaagggtttttgttcgagctggtgttattgtggcaatcgatttccccttatattgtttttttccacctgagcttattagtgcatcttgc 46757405  T
Q  399 acgggcttcttggttaataa 418  Q
    |||||||| |||||||||||    
T  46757406 acgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 26990601 - 26990739
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 398  Q
    |||||||||||||||| |||||||| ||||||||| || || ||||| |||||| ||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  26990601 gggtggtttttaagggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttgtatgttttttttccacccaagcttattagtgcttcttgc 26990700  T
Q  399 acgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||| |||||||||||| |||||||| ||||||||    
T  26990701 acgggcttattggttaataatattttgccgattcaaaaa 26990739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 8463097 - 8462958
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatcttgcacgg 402  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||| | |||||||||  || |||||||  ||||||| |||||||||     
T  8463097 tttttaaggggtttttgttcgagccgacgtttttgtggcaaccgattttcccttgtatgtattttttctccacccgagctaattagtgcttcttgcacga 8462998  T
Q  403 gcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||| |||||||||||| |||| || ||||||||| |||||    
T  8462997 gcttgttggttaataatatttt-ccatttcaaaaaaaaaaa 8462958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 42442142 - 42442019
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| |||| |   || |||||| || |||||||| ||||||| |||    
T  42442142 gggtggtttttaaggggtttttgttcgagtcggtgttttaatggcaaccgatttcccgttgtttgtattttttttttcacccgagcttattagtgcttct 42442043  T
Q  396 tgcacgggcttcttggttaataat 419  Q
    ||||||| ||| ||||||||||||    
T  42442042 tgcacggacttgttggttaataat 42442019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 47028931 - 47029072
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtg-ttttgtggcaaccgatttccccttgtgttta-----ttttttccatccgagcttgttagtgcat 393  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||     ||||||||| |||||||| ||| ||| |    
T  47028931 gggtagtttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatttatgtttttttttccacccgagcttattaatgcgt 47029030  T
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    ||||||||  ||| ||||||  |||| ||| |||||||||||||    
T  47029031 cttgcacgaacttgttggtt--taatatttggccgtttcaaaaa 47029072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 443
Target Start/End: Original strand, 38548673 - 38548821
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttatttttt--ccatccgagcttgttagtgcatc 394  Q
    |||||||||||||||||  ||||||||||||    ||| | ||||||||||||||||||||  ||||| ||||||  ||| |||||||| ||||||| ||    
T  38548673 gggtggtttttaaggggggtttgttcgagccaaattttgtatggcaaccgatttccccttgcttgtttttttttttcccacccgagcttattagtgcgtc 38548772  T
Q  395 ttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||||||| || |||||||||||| |||||||| |||||||| |||||    
T  38548773 ttgcacgggtttgttggttaataatattttgccgattcaaaaaaaaaaa 38548821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 425
Target Start/End: Complemental strand, 41956016 - 41955891
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgt-----ttattttttccatccgagcttgttagtgcatcttgca 399  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |     || |||| ||||||| ||||| |||||| ||||||||    
T  41956016 tttttaagggatttttgttcgagccggtgttattatggcaaccgatttccccttgtattttagtttttttctccatccaagcttattagtgtatcttgca 41955917  T
Q  400 cgggcttcttggttaataattttttg 425  Q
    ||   || |||||||||||| |||||    
T  41955916 cgaatttgttggttaataatattttg 41955891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 43268739 - 43268645
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtg 390  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||  | ||||| |||| |||| |||||||| ||||||    
T  43268739 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgttttttttctccacccgagcttattagtg 43268645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 26384960 - 26385100
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||| ||||||| |||| ||||||| | || ||||||||||||| |||| |   || ||||||||| || ||||| |||| || |||    
T  26384960 gggtggtttttaagggggttttgtttgagctggtgtttgtatgacaaccgatttccctttgtttgtatttttttttccacccaagcttattagcgcttct 26385059  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    || |||||||| | |||||||||| |||| | ||||||||||    
T  26385060 tg-acgggcttgtcggttaataatattttactgtttcaaaaa 26385100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 28447722 - 28447863
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatcttgcacg 401  Q
    |||||||| |||||||||||| || | ||||| | | ||||||||||| ||||||| |   || |||||| ||  |||  || ||||||| |||||||||    
T  28447722 tttttaagaggtttttgttcgtgctgatgtttatattgcaaccgattttcccttgtttgtcttttttttttcactcgaatttattagtgcttcttgcacg 28447821  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| |||||||||||| |||||||| |||||||| |||||    
T  28447822 ggcttgttggttaataatattttgccgattcaaaaaaaaaaa 28447863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 442
Target Start/End: Original strand, 43460698 - 43460848
Alignment:
Q  301 ggtggttttt-aaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgt--gtttattttttc----catccgagcttgttagtgc 391  Q
    |||||||||| |||||||||||||||||| | ||||||||  | ||||||||||||||||| |  |||| |||||||    || |  ||||| |||||||    
T  43460698 ggtggtttttgaaggggtttttgttcgagtcagtgttttgtatcgcaaccgatttccccttcttagttttttttttcttttcaccttagcttattagtgc 43460797  T
Q  392 atcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 442  Q
     ||| |||| | ||| |||||||||||| ||||| || |||||||| ||||    
T  43460798 ttctcgcacagacttgttggttaataatattttgtcgattcaaaaaaaaaa 43460848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 46691981 - 46691839
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcatc 394  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||    ||| |||||||||||||||| ||    
T  46691981 gggtggtttttaaggggtttttgttcgagccggtgtttatgtggcaaccgatttccccttgtatgtattttttttctccacccgagcttgttagtgcttc 46691882  T
Q  395 ttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  46691881 ttgcacgggcttgttggttaataatattttgccgattcaaaaa 46691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 30655727 - 30655586
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtg--gcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacg 401  Q
    |||||||| |||||||||||||| || | |||||||  ||||||||||||||||||| | ||||||||  ||| |||||||| ||||||| |||||||||    
T  30655727 tttttaagaggtttttgttcgagtcgatattttgtgtggcaaccgatttccccttgtttgtattttttttccacccgagcttattagtgcgtcttgcacg 30655628  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  30655627 ggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 30655586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 22197675 - 22197816
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 400  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22197675 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22197773  T
Q  401 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22197774 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 22240146 - 22240005
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 400  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22240146 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22240048  T
Q  401 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22240047 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22240005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 36615927 - 36615808
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggct 405  Q
    ||||||| |||||||||||||||| || |||| |||||||||||||||||||||| ||  ||||||||| |||||||| ||||||| |||||||||||||    
T  36615927 tttttaaagggtttttgttcgagctggagttt-gtggcaaccgatttccccttgttttgtttttttccacccgagcttattagtgcttcttgcacgggct 36615829  T
Q  406 tcttggttaataattttttgc 426  Q
    | |||| ||||||| ||||||    
T  36615828 tgttgggtaataatattttgc 36615808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 297 - 442
Target Start/End: Complemental strand, 31424912 - 31424761
Alignment:
Q  297 ttagggtggttttt--aaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtg 390  Q
    ||||||||||||||  |||||||||||| |||||||||||||| |  ||||||||||||||||||| |  |||| |||| |||| || ||||| ||||||    
T  31424912 ttagggtggttttttaaaggggtttttgatcgagccggtgtttcgaatggcaaccgatttccccttctttgttttttttctccacccaagcttattagtg 31424813  T
Q  391 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 442  Q
      ||||||||||| || |||||||||||| |||||||| |||||||| ||||    
T  31424812 tttcttgcacgggtttgttggttaataatattttgccgcttcaaaaaaaaaa 31424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 1039191 - 1039051
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtgcatcttgcacgg 402  Q
    |||||||||||||||||||||||||   |||| | | ||||||||||| |||||||  |||| |||| |||| |||||||| ||||||| ||||||||||    
T  1039191 tttttaaggggtttttgttcgagccaaagtttgtattgcaaccgattttcccttgtttgttttttttatccacccgagcttattagtgcttcttgcacgg 1039092  T
Q  403 gcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||| | |||||||||| ||||||||||| ||||| |||||    
T  1039091 gcttgtcggttaataatattttgccgtttgaaaaaaaaaaa 1039051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 49035983 - 49035865
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt----ttattttttccatccgagcttgttagtgcatcttgcac 400  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |    || |||| |||| |||||||| ||||||| ||||| ||    
T  49035983 tttttaaggggtttttgttcgaaccggtgtttatgtggcaaccgatttccccttgtttgtaatttttttctccacccgagcttattagtgcttcttgtac 49035884  T
Q  401 gggcttcttggttaataat 419  Q
    || ||| ||||||||||||    
T  49035883 ggacttgttggttaataat 49035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 425
Target Start/End: Original strand, 41702867 - 41702992
Alignment:
Q  303 tggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatcttgca 399  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||  ||||| |||| |||| || | ||| |||||||  ||||||    
T  41702867 tggtttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtatgttttttttctccacccaaacttattagtgctccttgca 41702966  T
Q  400 cgggcttcttggttaataattttttg 425  Q
    ||||||  |||||| ||||| |||||    
T  41702967 cgggctagttggttgataatattttg 41702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 33320710 - 33320817
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggc 404  Q
    ||||||||||| |||||||||||||||||||| |  ||||||| |||||||||||| |||   ||| ||| |||||||| ||||||| ||||||||||||    
T  33320710 tttttaagggggttttgttcgagccggtgtttgtaaggcaaccaatttccccttgttttt---tttcccacccgagcttattagtgcttcttgcacgggc 33320806  T
Q  405 ttcttggttaa 415  Q
    || ||||||||    
T  33320807 ttgttggttaa 33320817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 30655815 - 30655761
Alignment:
Q  212 gtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtcatta 266  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  30655815 gtgttgacgcaggggtatgcttgtggattgtcatttgtatatgccggcgtcatta 30655761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 437
Target Start/End: Original strand, 32678937 - 32679083
Alignment:
Q  297 ttagggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc-----catccgagcttgttagtg 390  Q
    |||| |||||||||||||||||||||||| |||| || |||| | ||||| ||||||  |||||| ||| ||||||      ||  ||||||| ||||||    
T  32678937 ttagagtggtttttaaggggtttttgttccagccagtattttagcggcaatcgatttttccttgtattttttttttttttttcactcgagcttattagtg 32679036  T
Q  391 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    | |||||||||||||| |||||||||||  ||| ||||||| |||||    
T  32679037 cgtcttgcacgggcttgttggttaataaaatttagccgtttaaaaaa 32679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 443
Target Start/End: Original strand, 42598053 - 42598130
Alignment:
Q  366 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||| |||| || ||||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |||||    
T  42598053 ttttctccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgccgttttaaaaaaaaaaa 42598130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 43397640 - 43397781
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttg------tgtttattttttccatccgagcttgttagtgcat 393  Q
    ||||||||||| | |||||||||||||||| | |||||||||||||| ||||| || |||      | ||| |||||| || || ||||| ||||||| |    
T  43397640 gggtggttttttaagggtttttgttcgagcagttgttttgtggcaacagattttcctttgtatgtttttttttttttttcacccaagctt-ttagtgctt 43397738  T
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||| || ||||||||||| | ||||||| ||||||||    
T  43397739 cttgcacgggtttattggttaataa-tatttgccgattcaaaaa 43397781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 294 - 430
Target Start/End: Original strand, 38908663 - 38908800
Alignment:
Q  294 gtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgttta-ttttttccatccgagcttgttagtgca 392  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||| |||||| || |||||||| ||||||||    
T  38908663 gtgttggggtggtttttaaggggtttttgttcgaaccggtgttttgtggctaccgattttcccttgtatttattttttttcacccgagcttattagtgca 38908762  T
Q  393 tcttgcacgggcttcttggttaataattttttgccgtt 430  Q
    |||||||||| ||| |||||||||||| ||||||||||    
T  38908763 tcttgcacggccttattggttaataatattttgccgtt 38908800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 300 - 427
Target Start/End: Original strand, 41419617 - 41419748
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||| ||||||   ||| |||||||| |||||||||||    
T  41419617 gggtggtttttaaggggtttttgttcgagtcggtgttattatggcaaccgatttccccttgtatttgtttttttttccacccgagcttattagtgcatct 41419716  T
Q  396 tgcacgggcttcttggttaataattttttgcc 427  Q
    ||||||||||| |||||||||||| |||||||    
T  41419717 tgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 14732473 - 14732334
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttcc-atccgagcttgttagtgcatcttg 397  Q
    |||||||||||||||||||||||||||||| ||| |||| | || ||||||||||||||||| ||  |||||||| | |||||||| |||||||| || |    
T  14732473 gggtggtttttaaggggtttttgttcgagctggtatttttgcggtaaccgatttccccttgtattatttttttcccacccgagcttattagtgcacctcg 14732374  T
Q  398 cacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    ||||||||| |||||||||||| ||||||| |||||||||    
T  14732373 cacgggcttgttggttaataatattttgccttttcaaaaa 14732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 418
Target Start/End: Complemental strand, 41378332 - 41378216
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttg 397  Q
    ||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||| |||    |||||||| |||||||| ||||||||||||     
T  41378332 gggtggtttttaaaggggtttttattcgagccggagtttgtgtggcaaccgatttcccctt-tgt---atttttccacccgagcttattagtgcatcttt 41378237  T
Q  398 cacgggcttcttggttaataa 418  Q
    ||||||||| |||||||||||    
T  41378236 cacgggcttgttggttaataa 41378216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 22649193 - 22649053
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttg--tggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgg 402  Q
    |||| |||||||||||| || ||||||||||| |  ||||||||||||||||||| | | | ||||| || | || ||||| ||||| | ||||||||||    
T  22649193 ttttaaaggggtttttgatcaagccggtgtttggaatggcaaccgatttccccttctttgtttttttctctacccaagcttattagtacttcttgcacgg 22649094  T
Q  403 gcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||| |||||||||||  |||||||| |||||||| |||||    
T  22649093 gcttgttggttaataaaattttgccgcttcaaaaaaaaaaa 22649053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 43356750 - 43356803
Alignment:
Q  366 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataat 419  Q
    |||||| || |||| ||| |||||||||||||||||| ||| ||||||||||||    
T  43356750 tttttttcacccgaacttattagtgcatcttgcacggacttattggttaataat 43356803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 40930961 - 40930818
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttatttttt-ccatccgagcttgttagtgcatcttgc 398  Q
    ||||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||| | |||||||| ||| |||||||| ||||||| ||||||    
T  40930961 gggtggtttttaaggagtttttgttcgagccgttgttt-gtgacaaccgatttccccttgtttgtatttttttccacccgagcttattagtgcttcttgc 40930863  T
Q  399 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||| |||||||||||| ||||||| ||||||||| |||||    
T  40930862 acgggcttgttggttaataatattttgccatttcaaaaaaaaaaa 40930818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 307 - 443
Target Start/End: Complemental strand, 13959347 - 13959207
Alignment:
Q  307 ttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatcttgcacgg 402  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| || |||| | ||||||||   ||| |||||||| ||| ||| ||||||||||    
T  13959347 ttttaaggggtttttgtttgagccggtgtttatgtggcaaccgattttcctttgtttgtatttttttttccacccgagcttattattgcttcttgcacgg 13959248  T
Q  403 gcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||| |||| ||||||| ||||||||||||||||| |||||    
T  13959247 gcttgttggctaataatattttgccgtttcaaaaaaaaaaa 13959207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 439
Target Start/End: Complemental strand, 24200753 - 24200614
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 398  Q
    |||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  24200753 gggtggtttttaagtg-tttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatgttttttttccacccaagcttattagtgcttcttgc 24200655  T
Q  399 acgggcttcttggttaataattttttgccgtttcaaaaata 439  Q
    |||| ||| ||| |||||||| |||||||| || |||||||    
T  24200654 acggacttgttgattaataatattttgccgattaaaaaata 24200614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 25829399 - 25829259
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 395  Q
    |||||||||||||||||||||| ||| ||||||||||| |  || ||||||||||||||||| | ||||||||   ||| |||||||| ||||||| |||    
T  25829399 gggtggtttttaaggggtttttattcaagccggtgtttatagggaaaccgatttccccttgtttgtatttttttttccacccgagcttattagtgcttct 25829300  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    ||||||||||| ||||||||||| | ||||||| ||||||||    
T  25829299 tgcacgggcttgttggttaataa-tatttgccgattcaaaaa 25829259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 300 - 444
Target Start/End: Complemental strand, 5200615 - 5200469
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatcttg 397  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||| | || |||| |||| || | ||| ||||||  |||||    
T  5200615 gggtgatttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgattttcccttgtatgtttttttctccacccaaacttattagtgtttcttg 5200516  T
Q  398 cacgggcttcttggttaataattttttgccgtttcaaaaataaaaag 444  Q
    ||||| ||| |||||||||||| |||||||| || ||||| ||||||    
T  5200515 cacggacttgttggttaataatattttgccgattaaaaaaaaaaaag 5200469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 436
Target Start/End: Original strand, 22839250 - 22839391
Alignment:
Q  300 gggtggtttttaagggg-tttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttt--tccatccgagcttgttagtgcatc 394  Q
    ||||||||||||| ||| ||||||||||||||| |||||| |  |||||||||||||| ||| | | | |||||  ||||||||| ||| ||||||| ||    
T  22839250 gggtggtttttaaagggatttttgttcgagccgatgttttatatggcaaccgatttcctcttctttgtttttttcctccatccgaacttattagtgcgtc 22839349  T
Q  395 ttgcacgggcttcttggttaataattttttgccgtttcaaaa 436  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  22839350 ttgcacgggcttgttggttaataatattttgccgattcaaaa 22839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 38086551 - 38086402
Alignment:
Q  300 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcat 393  Q
    |||||||||||  |||||||||||||||||||| | |||| | ||||||||||||| ||||| | | ||||||||   ||| |||||||| ||||||| |    
T  38086551 gggtggttttttaaaggggtttttgttcgagccagagtttgtatggcaaccgattttcccttctttgtatttttttctccacccgagcttattagtgcgt 38086452  T
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||||||||||| |||||||||||| |||||| | ||| |||| |||||    
T  38086451 cttgcacgggcttattggttaataatattttgctgattctaaaaaaaaaa 38086402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 10124866 - 10124935
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttcc 373  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | | ||||||||    
T  10124866 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttgtttgttttttttcc 10124935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 30836272 - 30836116
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttt-------tccatccgagctt----gtt 386  Q
    ||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||||||| | ||| |||||       |||||||||||||     ||    
T  30836272 gggtggtttttaaaggggtttttgttcgagccggtatttgtgcggcaatcgatttccccttctttttttttttttttttctccatccgagcttattaatt 30836173  T
Q  387 agtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| ||| ||||| |||| |||||||||||| |||||||| |||||||| |||||    
T  30836172 agtgcttctcgcacgagcttgttggttaataatattttgccgattcaaaaaaaaaaa 30836116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 443
Target Start/End: Original strand, 7845135 - 7845184
Alignment:
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  7845135 cttgcacgggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 7845184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 442
Target Start/End: Complemental strand, 44362994 - 44362918
Alignment:
Q  366 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 442  Q
    |||||||||||||| ||| ||||||| |||||||| || || ||||||||||||  ||| |||||||||||| ||||    
T  44362994 ttttttccatccgaacttattagtgcttcttgcacaggattgttggttaataataattttccgtttcaaaaaaaaaa 44362918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 584187 - 584123
Alignment:
Q  379 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 7845080 - 7845138
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 359  Q
    ||||||||||||||||| ||  |||||||||||||||  ||| ||||||||||||||||||    
T  7845080 gggtggtttttaaggggatt--gttcgagccggtgttaatgttgcaaccgatttccccttg 7845138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 306 - 427
Target Start/End: Original strand, 16572074 - 16572198
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgg 402  Q
    ||||||| ||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||||||  ||| |||||||| ||||||||||| ||||||    
T  16572074 tttttaaaggggttttgttcgaaccggtgtttttgcggcaaccgatttccccttgtatttattttttttccacccgagcttattagtgcatctcgcacgg 16572173  T
Q  403 gcttcttggttaataattttttgcc 427  Q
    |||| |||||||||||| |||||||    
T  16572174 gcttgttggttaataatattttgcc 16572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 442
Target Start/End: Complemental strand, 47571694 - 47571560
Alignment:
Q  308 tttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacgggctt 406  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||| ||||||| ||||||||||  || |||||||| |||||||  ||| |||||| ||    
T  47571694 tttaaggggtttttgtttgagccggtgttt-gtggcaaccaattttcccttgtatttattttttttcacccgagcttattagtgctccttccacgggttt 47571596  T
Q  407 cttggttaataattttttgccgtttcaaaaataaaa 442  Q
     |||||||||||| |||||||| |||||||| ||||    
T  47571595 gttggttaataatattttgccgattcaaaaaaaaaa 47571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 443
Target Start/End: Original strand, 32183275 - 32183425
Alignment:
Q  300 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttatttt-ttccatccgagcttgttagtgcat 393  Q
    |||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||  | ||||| |||| ||||| |||||||| |||||||      
T  32183275 gggtggttttttaaaggggtttttgttcgagccggtgtttgtatggcaaccgatttccccttctttgttttttttcttccacccgagcttattagtgcgc 32183374  T
Q  394 cttgcacgggctt-cttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||||||||  |||||||||||| |||||||| || ||||| |||||    
T  32183375 cttgcacgggcttgtttggttaataatattttgccgatttaaaaaaaaaaa 32183425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 15187072 - 15186975
Alignment:
Q  341 ggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||||||||||||| ||  ||||| |||| || ||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  15187072 ggcaaccgatttccccttgtattcttttttatccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccgattcaaaaa 15186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 303 - 437
Target Start/End: Complemental strand, 55133233 - 55133102
Alignment:
Q  303 tggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacg 401  Q
    |||||||||| |||||||||||||||| | ||||| |||||||| | ||||||| |||| | | || ||| |||||||| || ||||||| |||||||||    
T  55133233 tggtttttaaagggtttttgttcgagctgatgtttgtgtggcaatcaatttccc-ttgtttgttttcttttcatccgagtttattagtgcttcttgcacg 55133135  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||   |||||||||| ||||| |||||||||||    
T  55133134 ggctt---ggttaataatattttgtcgtttcaaaaa 55133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 25641407 - 25641263
Alignment:
Q  300 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgca 392  Q
    |||||||||||  || |||||||||||||||||| ||||  | |||||||| |||||||||| | | ||||||||    ||| || ||||| |||||||     
T  25641407 gggtggttttttaaaagggtttttgttcgagccgatgttagtatggcaaccaatttccccttctttgtattttttttctccacccaagctttttagtgct 25641308  T
Q  393 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  25641307 tcttgcacgggcttgttggttaataacattttgccgattcaaaaa 25641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 437
Target Start/End: Complemental strand, 16662441 - 16662301
Alignment:
Q  299 agggtggtttttaa-ggggtttttgttcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 395  Q
    |||||||||||||| ||||||||||| |||||| |||||||||  |||||| ||||| ||||| |   | ||||||||| |  ||||| ||||||| |||    
T  16662441 agggtggtttttaaaggggtttttgtacgagccagtgttttgtatggcaacagattttcccttcttagt-ttttttccaccttagcttattagtgcttct 16662343  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
     |||||||||| |||||||||||| |||||| | ||||||||    
T  16662342 cgcacgggcttgttggttaataatattttgctgattcaaaaa 16662301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 437
Target Start/End: Complemental strand, 42390906 - 42390766
Alignment:
Q  301 ggtggtttttaaggggtttttgttcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatctt 396  Q
    |||||||||||||||||||||||| ||||||||||||| | |||||||||||   |||| | ||| |||||   |||| |||||||| ||||| | ||||    
T  42390906 ggtggtttttaaggggtttttgtttgagccggtgttttagcggcaaccgattgttccttttatttgtttttttctccacccgagcttattagtacgtctt 42390807  T
Q  397 gcacgggcttcttggttaataattttttgccgtttcaaaaa 437  Q
    |||||||||| ||||  |||||  ||| |||| ||||||||    
T  42390806 gcacgggcttgttggaaaataaaatttagccgattcaaaaa 42390766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 509
Target Start/End: Original strand, 5341706 - 5341772
Alignment:
Q  443 agctcctataaatatatcaacccttacactcactctcacatcaccaacaccacttcctctcaatctc 509  Q
    |||||||||||||| |  |||||| | |||||||||||||||||||||| |||||||||||| ||||    
T  5341706 agctcctataaataaacaaaccctcagactcactctcacatcaccaacatcacttcctctcattctc 5341772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 503
Target Start/End: Original strand, 25222218 - 25222278
Alignment:
Q  443 agctcctataaatatatcaacccttacactcactctcacatcaccaacaccacttcctctc 503  Q
    |||||||||||||| || |||| ||| |||||||||||||||||||||| ||||| |||||    
T  25222218 agctcctataaataaataaacctttatactcactctcacatcaccaacatcactttctctc 25222278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 45511440 - 45511390
Alignment:
Q  393 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||||||||| |||||||||||| |||||| | |||||||| |||||    
T  45511440 tcttgcacgggcttgttggttaataatattttgctgattcaaaaaaaaaaa 45511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 23173107 - 23172985
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatctt 396  Q
    ||||||||||||||||| |||||||||||||||||||| |  |||||| |||||| |||||| | ||||||||  ||| |||||||| ||||||| ||||    
T  23173107 gggtggtttttaagggggttttgttcgagccggtgtttatagggcaactgatttctccttgtttgtattttttttccacccgagcttattagtgcttctt 23173008  T
Q  397 gcacgggcttcttggttaataat 419  Q
    |||||||||| ||||||||||||    
T  23173007 gcacgggcttgttggttaataat 23172985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 300 - 425
Target Start/End: Original strand, 22887211 - 22887337
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttatttt-ttccatccgagcttgttagtgcatcttgc 398  Q
    ||||||||||||||||||||||||| || || || |||||||||||| ||||| ||||| | ||| |||| | ||| |||||||| ||||||||||| ||    
T  22887211 gggtggtttttaaggggtttttgtttgaacctgtcttttgtggcaactgattttcccttatattttttttctcccacccgagcttattagtgcatctcgc 22887310  T
Q  399 acgggcttcttggttaataattttttg 425  Q
    |||||||| |||||||||||| |||||    
T  22887311 acgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 300 - 443
Target Start/End: Complemental strand, 9931935 - 9931785
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt-------ccatccgagcttgttagtgc 391  Q
    ||||||||||| ||| |||||||||||||| ||||||| || ||||||||||||||||| || | ||||||||       ||| || |||||||||||||    
T  9931935 gggtggtttttgaggtgtttttgttcgagctggtgtttgtgcggcaaccgatttcccctcgtttgtatttttttttcttcccacccaagcttgttagtgc 9931836  T
Q  392 atcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
     |||||||||||||| ||||||||||| | ||| |||||||||||| |||||    
T  9931835 ttcttgcacgggcttgttggttaataa-tatttaccgtttcaaaaaaaaaaa 9931785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 291 - 425
Target Start/End: Original strand, 25539810 - 25539947
Alignment:
Q  291 ttagtgttagggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgtt 386  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| ||    | |||||| || |||||||| ||    
T  25539810 ttagttttggggtggtttttaaggggtttttgttcgagccgatgtttgatggcaaccgatttcctcttgtatttttgtttttttttcacccgagcttatt 25539909  T
Q  387 agtgcatcttgcacgggcttcttggttaataattttttg 425  Q
    | ||| |||||||||||||| |||| ||||||| |||||    
T  25539910 aatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 443
Target Start/End: Original strand, 10431063 - 10431204
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttt-tccatccgagcttgttagtgcatcttgcacg 401  Q
    |||||| | |||||||||||||| |||||||| |||||||||||||||| ||||||  |||| ||||| |||| |||| ||| ||| ||| |||||||||    
T  10431063 tttttatgaggtttttgttcgagtcggtgtttgtgtggcaaccgatttctccttgtttgtttttttttctccacccgaacttattaatgcttcttgcacg 10431162  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    || || ||| |||||||| |||| |||||||||||| |||||    
T  10431163 ggtttgttgattaataatatttttccgtttcaaaaaaaaaaa 10431204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 819254 - 819134
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgcacgggc 404  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||| |||| || | ||||||||| |||| ||| ||||||| |||| ||||| |    
T  819254 tttttaaggggtttttgttcgagttggtg-tttgtggcaaccgatttccctttgttttattttttttccacccgaacttattagtgcttcttacacggac 819156  T
Q  405 ttcttggttaataattttttgc 426  Q
    || |||| ||||||| ||||||    
T  819155 ttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 442
Target Start/End: Complemental strand, 3677924 - 3677779
Alignment:
Q  300 gggtggtttttaaggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgttagtgcatct 395  Q
    ||||||||||||||||||||||||| ||||| |||| ||| |||||||||||  ||||||| ||    | ||||||||| |||||||| |||||||||||    
T  3677924 gggtggtttttaaggggtttttgtttgagccagtgtattgcggcaaccgattgtcccttgtattcttgttttttttccacccgagcttattagtgcatct 3677825  T
Q  396 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 442  Q
     ||| |||||| |||| ||||||| | |||| | |||||||| ||||    
T  3677824 cgcatgggcttgttgg-taataatatattgctgattcaaaaaaaaaa 3677779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 315 - 443
Target Start/End: Complemental strand, 42241708 - 42241577
Alignment:
Q  315 ggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttcc--atccgagcttgttagtgcatcttgcacgggcttcttgg 411  Q
    ||||||||||| |||||| |||| | |||| |||||||||||||| | | |||||||| |  |||||||||| |||||||||||||| ||| ||| ||||    
T  42241708 ggtttttgttcaagccggagtttgtatggcgaccgatttccccttctttgtatttttttctcatccgagcttattagtgcatcttgcccggacttattgg 42241609  T
Q  412 ttaataattttttgccgtttcaaaaataaaaa 443  Q
    |||||||| |||||||| || ||||| |||||    
T  42241608 ttaataatattttgccgattaaaaaaaaaaaa 42241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 2292168 - 2292222
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttttgt--ggcaaccgatttcccctt 358  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2292168 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttcccctt 2292222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 9597800 - 9597742
Alignment:
Q  385 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||||| |||||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  9597800 ttagtgcttcttgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 9597742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 33112844 - 33112703
Alignment:
Q  306 tttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccga-gcttgttagtgcatcttgcacg 401  Q
    |||||||||||||||||||||||||   |||| | ||||||||||||||||||||  ||||| ||||||||  || | |||| ||||||| |||||||||    
T  33112844 tttttaaggggtttttgttcgagccaaagtttgtatggcaaccgatttccccttgcttgttttttttttcccccccaagctttttagtgcgtcttgcacg 33112745  T
Q  402 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| |||||||||||| |||||||| |||||||| |||||    
T  33112744 ggcttgttggttaataatattttgccgattcaaaaaaaaaaa 33112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 10246910 - 10247049
Alignment:
Q  300 gggtggtttttaa-ggggtttttgttcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 398  Q
    ||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||| | | | |||| |||| | || | | ||||||| ||||||    
T  10246910 gggtggtttttaaaggggtttttgttcgagccggtgttgtgtgacaaccgattttcccttctttgttttttctccacctgaaccttttagtgcttcttgc 10247009  T
Q  399 acgggcttcttggttaataat-tttttgccgtttcaaaaa 437  Q
    |||||||| |||||||||||| ||||||||| || |||||    
T  10247010 acgggcttgttggttaataatatttttgccgattaaaaaa 10247049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 212 - 444
Target Start/End: Original strand, 11546685 - 11546912
Alignment:
Q  212 gtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtcattatttttgtgtccggtagttagtgccttagtgttagggtggttttta 311  Q
    ||||||| |||||||||| | || |||||||||| |||||||||||||||||||| | ||||    |||||||  | | |||| | |||     ||||||    
T  11546685 gtgttgacgcaggggtattcatgaggattgtcatatgtatatgtctgcgtcattactcttgta---ggtagttccttctttaggggtagt----ttttta 11546777  T
Q  312 aggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacgggcttctt 409  Q
    ||| |||||||||||||||||||||| | || ||||||||||| |||| | | | ||||||| || |||||||| |||||||  ||||||||||||| |     
T  11546778 aggagtttttgttcgagccggtgtttgtatgacaaccgatttctccttctttgttttttttctcacccgagcttattagtgctacttgcacgggcttgtc 11546877  T
Q  410 ggttaataattttttgccgtttcaaaaataaaaag 444  Q
     ||||||||| ||||||||||| ||||| ||||||    
T  11546878 agttaataatattttgccgtttaaaaaaaaaaaag 11546912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 434
Target Start/End: Original strand, 6575720 - 6575860
Alignment:
Q  299 agggtggtttttaaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 393  Q
    ||||||||||||||| ||||||||||||||||| ||||| | || |||| ||||| || |||||| ||||||||    ||| |||| ||| ||||||| |    
T  6575720 agggtggtttttaagaggtttttgttcgagccgatgtttgtatgacaactgattttcctttgtgtgtatttttttcttccacccgaacttattagtgctt 6575819  T
Q  394 cttgcacgggcttcttggttaataattttttgccgtttcaa 434  Q
    ||||||||||||| ||| |||||||| |||||||| |||||    
T  6575820 cttgcacgggcttgttgattaataatattttgccgattcaa 6575860  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 442
Target Start/End: Original strand, 15859093 - 15859244
Alignment:
Q  300 gggtggttttt--aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttcccc----ttgtgtttattttttccatccgagcttgttagtgca 392  Q
    |||||||||||  ||||||||||||||||||||||||||| | |||||||||||||||||    |||| ||| |||| |||| |||||||| |||||||     
T  15859093 gggtggttttttaaaggggtttttgttcgagccggtgtttgtttggcaaccgatttccccttctttgttttttttttctccacccgagcttattagtgcg 15859192  T
Q  393 tcttgcacgggct--tcttggttaataattttttgccgtttcaaaaataaaa 442  Q
     ||||||||||||  | ||| |||||||| |||||||| ||| |||| ||||    
T  15859193 ccttgcacgggcttgttttgattaataatattttgccgattctaaaaaaaaa 15859244  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 443
Target Start/End: Original strand, 34761080 - 34761306
Alignment:
Q  212 gtgttgatgcaggggtatgcttgcggattgtcatttgtatatgtctgcgtcattatttttgtgtccggtagttagtgccttagtgttagggtggttttt- 310  Q
    ||||||| |||||||||| | || |||||||||| |||||||| ||||||||||| | ||||    |||||||  | | ||||     |||||||||||     
T  34761080 gtgttgacgcaggggtattcatgaggattgtcatatgtatatgcctgcgtcattactgttgta---ggtagttccttctttag-----gggtggtttttt 34761171  T
Q  311 aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgggcttc 407  Q
    |||| ||||||||||||| |||||||| | || |||||||||||  ||| | | ||||||||  ||| |||||||| |||||||  |||||||||||||     
T  34761172 aaggagtttttgttcgagtcggtgtttgtatgacaaccgatttcttcttctttgtatttttttcccacccgagcttattagtgctacttgcacgggcttg 34761271  T
Q  408 ttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    | | ||||||| | |||||||||||||||| |||||    
T  34761272 tcgtttaataa-tatttgccgtttcaaaaaaaaaaa 34761306  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 33984753 - 33984814
Alignment:
Q  300 gggtggttttt-aaggggtttttgttcgagccggtgttt-tgtggcaaccgatttccccttg 359  Q
    ||||||||||| ||||||||||||||||| || |||||| | ||||||||||||||||||||    
T  33984753 gggtggtttttgaaggggtttttgttcgaaccagtgtttgtatggcaaccgatttccccttg 33984814  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 12754465 - 12754422
Alignment:
Q  385 ttagtgcatcttgcacgggcttcttggttaataattttttgccg 428  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  12754465 ttagtgcgtcttgcacgggtttgttggttaataattttttgccg 12754422  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 12947 - 12883
Alignment:
Q  379 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 443  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 12883  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 7956 - 8012
Alignment:
Q  385 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaa 441  Q
    ||||||||| |||||  ||||| |||||||||||| |||||||| || |||||||||    
T  7956 ttagtgcattttgcataggcttgttggttaataatattttgccgatttaaaaataaa 8012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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