View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2646_low_6 (Length: 435)

Name: NF2646_low_6
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2646_low_6
NF2646_low_6
[»] chr2 (10 HSPs)
chr2 (8-435)||(33519366-33519793)
chr2 (77-377)||(33496221-33496521)
chr2 (377-432)||(19536453-19536508)
chr2 (378-424)||(20539737-20539783)
chr2 (378-435)||(23717977-23718033)
chr2 (378-435)||(24105649-24105705)
chr2 (379-410)||(38117230-38117261)
chr2 (377-407)||(37419703-37419733)
chr2 (388-433)||(4142894-4142939)
chr2 (379-432)||(21624217-21624270)
[»] chr5 (5 HSPs)
chr5 (378-435)||(19820446-19820503)
chr5 (376-432)||(22013362-22013418)
chr5 (378-432)||(37328899-37328953)
chr5 (378-432)||(42469171-42469225)
chr5 (378-410)||(2436878-2436910)
[»] chr7 (6 HSPs)
chr7 (378-433)||(27944991-27945046)
chr7 (377-432)||(24105628-24105682)
chr7 (378-424)||(43027532-43027578)
chr7 (378-410)||(7328768-7328800)
chr7 (378-430)||(33994162-33994214)
chr7 (379-435)||(49107773-49107828)
[»] chr6 (8 HSPs)
chr6 (378-432)||(853914-853968)
chr6 (378-432)||(8365574-8365628)
chr6 (380-432)||(12696277-12696328)
chr6 (378-432)||(3398569-3398623)
chr6 (378-432)||(6389693-6389747)
chr6 (378-432)||(4877890-4877946)
chr6 (377-410)||(10649277-10649310)
chr6 (387-435)||(9027137-9027185)
[»] chr1 (8 HSPs)
chr1 (377-424)||(39130830-39130877)
chr1 (378-424)||(5927403-5927449)
chr1 (377-433)||(9630634-9630690)
chr1 (378-410)||(35702659-35702691)
chr1 (393-432)||(40917716-40917755)
chr1 (389-432)||(48040517-48040560)
chr1 (394-435)||(398817-398858)
chr1 (395-427)||(18190160-18190192)
[»] scaffold0306 (1 HSPs)
scaffold0306 (378-432)||(13350-13404)
[»] scaffold0223 (1 HSPs)
scaffold0223 (378-432)||(20122-20176)
[»] scaffold0152 (1 HSPs)
scaffold0152 (378-432)||(21923-21977)
[»] chr8 (6 HSPs)
chr8 (378-420)||(40332155-40332197)
chr8 (378-425)||(28642358-28642405)
chr8 (377-407)||(22595949-22595979)
chr8 (378-432)||(25192402-25192456)
chr8 (378-435)||(126401-126457)
chr8 (376-432)||(13437019-13437075)
[»] chr3 (6 HSPs)
chr3 (377-434)||(4466653-4466710)
chr3 (379-432)||(8587076-8587129)
chr3 (378-435)||(8842280-8842337)
chr3 (378-432)||(55401025-55401079)
chr3 (377-410)||(34910278-34910311)
chr3 (379-407)||(8789624-8789652)
[»] scaffold0171 (1 HSPs)
scaffold0171 (377-432)||(23370-23424)
[»] scaffold0018 (1 HSPs)
scaffold0018 (381-432)||(178874-178925)
[»] scaffold0361 (1 HSPs)
scaffold0361 (379-408)||(14498-14527)
[»] scaffold0053 (1 HSPs)
scaffold0053 (387-432)||(8757-8802)
[»] scaffold0019 (1 HSPs)
scaffold0019 (377-410)||(71678-71711)
[»] chr4 (4 HSPs)
chr4 (378-407)||(7251701-7251730)
chr4 (379-424)||(7670632-7670677)
chr4 (377-406)||(23700420-23700449)
chr4 (382-410)||(482308-482336)
[»] scaffold0066 (1 HSPs)
scaffold0066 (378-410)||(33432-33464)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 33519366 - 33519793
Alignment:
Q  8 agtgagatgaattaaaagaaaatggctatatcgttctttcttagtaactttttccgctcttctgatggcaaggttactagatcccctagtttttggcgag 107  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519366 agtgacatgaattaaaagaaaatggctctatcgttctttcttagtaactttttccgctcttctgatggcaaggttactagatcccctagtttttggcgag 33519465  T
Q  108 taccctgctgatatgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctcctaagaggcagcctggacttcattggcatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519466 taccctgctgatatgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctcctaagaggcagcctggacttcattggcatca 33519565  T
Q  208 ataactacggggctctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaacaggaatgag 307  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  33519566 ataactacggggctctctatgccaaggattgctacctctctacttgccctctcgaagcagctcgtccaataaaaggctttttgcaaacaactgggatgag 33519665  T
Q  308 agatggcattccaattggtgatcaggtactcatatgtagtccaactgttcttgtcattgtgttatatggtctatgaagcacggatacggacaccggacac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33519666 agatggcattccaattggtgatcaggtactcatatgtagtccaactgtttttgtcattgtgttatatggtctatgaagcacggatacggacaccggacac 33519765  T
Q  408 gacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||||||||||||||    
T  33519766 gacgcggatactgacacaccgacaccgc 33519793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 77 - 377
Target Start/End: Complemental strand, 33496521 - 33496221
Alignment:
Q  77 aaggttactagatcccctagtttttggcgagtaccctgctgatatgcgctctattcttgggagccagttgcctaggttctcatctaaggagaagagcctc 176  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| | | ||||  | ||||||||||| |||    
T  33496521 aaggttactagatcccctagtttttggtgagtaccctgctgagatgcgctctattcttgggaaccggttgccaaagatctctacgaaggagaagagtctc 33496422  T
Q  177 ctaagaggcagcctggacttcattggcatcaataactacggggctctctatgccaaggaatgctacctctcaacttgccctctcgaagcagctcgtccaa 276  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||    
T  33496421 ctaagaggcagcctggacttcattggcatcaataactatggagctctctatgccaaggattgctacctctctacttgtccactcgaggcagctcgtccaa 33496322  T
Q  277 taaaaggctttttgcaaacaacaggaatgagagatggcattccaattggtgatcaggtactcatatgtagtccaactgttcttgtcattgtgttatatgg 376  Q
    ||| ||||||| || ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  33496321 taagaggctttctggaaacaactgggatgagagatggcattccaattggtgatcaggtactcgtatgtagtccaactgctcttgtcattatgttatatgg 33496222  T
Q  377 t 377  Q
    |    
T  33496221 t 33496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 432
Target Start/End: Complemental strand, 19536508 - 19536453
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||| ||||||||||||||||||||| |||| | |||||| |||||||    
T  19536508 tctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacac 19536453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 20539783 - 20539737
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacac 424  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacac 20539737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 23717977 - 23718033
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||    
T  23717977 ctatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgc 23718033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 24105649 - 24105705
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||| ||||| ||||| ||| |||| |||||||||||||||||||    
T  24105649 ctatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgc 24105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 38117261 - 38117230
Alignment:
Q  379 tatgaagcacggatacggacaccggacacgac 410  Q
    ||||||||||||||||||||||||||||||||    
T  38117261 tatgaagcacggatacggacaccggacacgac 38117230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 37419703 - 37419733
Alignment:
Q  377 tctatgaagcacggatacggacaccggacac 407  Q
    |||||||||||||||||||||||||||||||    
T  37419703 tctatgaagcacggatacggacaccggacac 37419733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 4142939 - 4142894
Alignment:
Q  388 cggatacggacaccggacacgacgcggatactgacacaccgacacc 433  Q
    ||||||||||||||| ||||||| |||| |||||||| ||||||||    
T  4142939 cggatacggacaccgaacacgacccggacactgacacgccgacacc 4142894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 21624217 - 21624270
Alignment:
Q  379 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||| ||||||||||||||| ||||||| | || |||||||| |||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacac 21624270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 19820503 - 19820446
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgc 19820446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 22013362 - 22013418
Alignment:
Q  376 gtctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  22013362 gtctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacac 22013418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 37328953 - 37328899
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||| |||||||||| ||||||| |||| ||||| ||||||||||    
T  37328953 ctatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacac 37328899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 42469171 - 42469225
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||| |||||||||| ||||||| |||||| |||||| |||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacac 42469225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 410
Target Start/End: Original strand, 2436878 - 2436910
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgac 410  Q
    |||||||||||||||||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgac 2436910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 27944991 - 27945046
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacacc 433  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacc 27945046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 24105628 - 24105682
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||||| |||||||    
T  24105628 tctatgaagcacggatacggata-cggacacgacacggacactgacacgccgacac 24105682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 43027578 - 43027532
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacac 424  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacac 43027532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 7328800 - 7328768
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgac 410  Q
    ||||||||||||||||||||||||| |||||||    
T  7328800 ctatgaagcacggatacggacaccgaacacgac 7328768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 33994162 - 33994214
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgac 430  Q
    |||||||||||||||||||||||  |||||||| || | |||||||| |||||    
T  33994162 ctatgaagcacggatacggacacttgacacgacacgaacactgacacgccgac 33994214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 49107773 - 49107828
Alignment:
Q  379 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    |||||| ||||||||||||||  ||||||||| ||||  ||||||||||||||||||    
T  49107773 tatgaaacacggatacggacaa-ggacacgacacggactctgacacaccgacaccgc 49107828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 853968 - 853914
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacac 853914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 8365628 - 8365574
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||| |||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacac 8365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 12696277 - 12696328
Alignment:
Q  380 atgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||||||||| |||||||||| |||| |||||||| |||||||    
T  12696277 atgaagcacggatacggaca-cggacacgacacggacactgacacgccgacac 12696328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 3398569 - 3398623
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||| ||||||||||| || ||||||| |||| |||||||| |||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacac 3398623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 6389693 - 6389747
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||| || ||||||||||||||| |||| ||| |||| |||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacac 6389747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 4877890 - 4877946
Alignment:
Q  378 ctatgaagcacggatacggacac--cggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||| |||||||||||  || ||||||| |||||| ||||||||||||||    
T  4877890 ctatgaagcacagatacggacacgccgaacacgacacggatagtgacacaccgacac 4877946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 10649277 - 10649310
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgac 410  Q
    |||||||||||||||||||||||||||| |||||    
T  10649277 tctatgaagcacggatacggacaccggatacgac 10649310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 9027137 - 9027185
Alignment:
Q  387 acggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||| |||||| ||||||||||| |||| |||||||| ||||||||||    
T  9027137 acggacacggactccggacacgacacggacactgacacgccgacaccgc 9027185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 424
Target Start/End: Complemental strand, 39130877 - 39130830
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacac 424  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  39130877 tctatgaagcacggatacggacaccggacacgacatggatattgacac 39130830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 5927449 - 5927403
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacac 424  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacac 5927403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 9630690 - 9630634
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacacc 433  Q
    |||||||||||||||||| |||||| ||||| || |||| |||||||| ||||||||    
T  9630690 tctatgaagcacggatacagacaccagacacaacacggacactgacacgccgacacc 9630634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 35702691 - 35702659
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgac 410  Q
    |||||||||||||||||||||||||||||||||    
T  35702691 ctatgaagcacggatacggacaccggacacgac 35702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 40917716 - 40917755
Alignment:
Q  393 acggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacac 40917755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 48040560 - 48040517
Alignment:
Q  389 ggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||||||||||| |||| |||||||| |||||||    
T  48040560 ggatacggacaccggacacgacacggacactgacacgccgacac 48040517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 398858 - 398817
Alignment:
Q  394 cggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||| |||| |||||||| ||||||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgc 398817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 18190192 - 18190160
Alignment:
Q  395 ggacaccggacacgacgcggatactgacacacc 427  Q
    |||||||||||||||| ||||||||||||||||    
T  18190192 ggacaccggacacgacacggatactgacacacc 18190160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 13350 - 13404
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||||||||||||||||||| | ||| |||| |||||||| |||||||    
T  13350 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacac 13404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 20122 - 20176
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||| |||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacac 20176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 21977 - 21923
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||||||||||||||||||| | ||| |||| |||||||| |||||||    
T  21977 ctatgaagcacggatacggacaccggagatgacacggacactgacacgccgacac 21923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 420
Target Start/End: Original strand, 40332155 - 40332197
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactg 420  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  40332155 ctatgaagcacggatacggacaccggacacgacacggacactg 40332197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 28642358 - 28642405
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacaca 425  Q
    |||||||||||||||||||||| |||||||||| |||| | |||||||    
T  28642358 ctatgaagcacggatacggacatcggacacgacacggacaatgacaca 28642405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 407
Target Start/End: Original strand, 22595949 - 22595979
Alignment:
Q  377 tctatgaagcacggatacggacaccggacac 407  Q
    |||||||||||||||||||||||||||||||    
T  22595949 tctatgaagcacggatacggacaccggacac 22595979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Complemental strand, 25192456 - 25192402
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||| ||||||||| |||||||||  |||| |||||||| |||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacac 25192402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 126457 - 126401
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    |||||||||||||||||| |||| ||||||||  ||||||||||||| || |||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgc 126401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 13437075 - 13437019
Alignment:
Q  376 gtctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||||| | |||||||||||| |||  ||| |||||||| |||||||    
T  13437075 gtctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacac 13437019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 434
Target Start/End: Complemental strand, 4466710 - 4466653
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccg 434  Q
    ||||||||||| |||||||||||||||||| ||| || | |||||||| |||||||||    
T  4466710 tctatgaagcatggatacggacaccggacatgacacgaacactgacactccgacaccg 4466653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 8587129 - 8587076
Alignment:
Q  379 tatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacac 8587076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 8842280 - 8842337
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgc 435  Q
    ||||||||||||||||||||||||||| ||||| |||| | |||||  ||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgc 8842337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 55401025 - 55401079
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||||| || |||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacac 55401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 34910278 - 34910311
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgac 410  Q
    ||||||||||||||||||||||||| ||||||||    
T  34910278 tctatgaagcacggatacggacaccagacacgac 34910311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 8789652 - 8789624
Alignment:
Q  379 tatgaagcacggatacggacaccggacac 407  Q
    |||||||||||||||||||||||||||||    
T  8789652 tatgaagcacggatacggacaccggacac 8789624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 23370 - 23424
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||||||||||||||||||||| |||||||||| | || |||||||| |||||||    
T  23370 tctatgaagcacggatacggaca-cggacacgacacagacactgacacgccgacac 23424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 178925 - 178874
Alignment:
Q  381 tgaagcacggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    |||||||||||||  ||||||||||||||| |||| |||||||| |||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacac 178874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 14498 - 14527
Alignment:
Q  379 tatgaagcacggatacggacaccggacacg 408  Q
    ||||||||||||||||||||||||||||||    
T  14498 tatgaagcacggatacggacaccggacacg 14527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 8757 - 8802
Alignment:
Q  387 acggatacggacaccggacacgacgcggatactgacacaccgacac 432  Q
    ||||| |||||||||||||||||| |||| |||||||| |||||||    
T  8757 acggacacggacaccggacacgacacggacactgacacgccgacac 8802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 71678 - 71711
Alignment:
Q  377 tctatgaagcacggatacggacaccggacacgac 410  Q
    ||||||||||||||||||||||| ||||||||||    
T  71678 tctatgaagcacggatacggacatcggacacgac 71711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Complemental strand, 7251730 - 7251701
Alignment:
Q  378 ctatgaagcacggatacggacaccggacac 407  Q
    ||||||||||||||||||||||||||||||    
T  7251730 ctatgaagcacggatacggacaccggacac 7251701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Original strand, 7670632 - 7670677
Alignment:
Q  379 tatgaagcacggatacggacaccggacacgacgcggatactgacac 424  Q
    ||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  7670632 tatgaagcacgaatatggataccggacacgacgcggaaactgacac 7670677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 23700420 - 23700449
Alignment:
Q  377 tctatgaagcacggatacggacaccggaca 406  Q
    ||||||||||||||||||||||||||||||    
T  23700420 tctatgaagcacggatacggacaccggaca 23700449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 482336 - 482308
Alignment:
Q  382 gaagcacggatacggacaccggacacgac 410  Q
    |||||||||||||||||||||||||||||    
T  482336 gaagcacggatacggacaccggacacgac 482308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 33464 - 33432
Alignment:
Q  378 ctatgaagcacggatacggacaccggacacgac 410  Q
    |||||||||||||||| ||||||||||||||||    
T  33464 ctatgaagcacggataaggacaccggacacgac 33432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University