View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2646_low_9 (Length: 340)
Name: NF2646_low_9
Description: NF2646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2646_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 48274875 - 48275184
Alignment:
| Q |
18 |
ttaagagaccaaaattgtttgatccttgcaatttagatgactaaaatggtgattaaatttacaatttaactacatgtctgagttattgaacagtttcatg |
117 |
Q |
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| T |
48274875 |
ttaagagaccaaaattgtttgatccttgcaatttagatgactaaaatggtgattaaatttacaatttaactacatgtctgagttattgaacagtttcatg |
48274974 |
T |
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| Q |
118 |
ttggttttccaaatataattcaggtggtattgtgagcaacactttgcgccctccaattcctcaatcttgtgatccagaatggagtttgctgatggagaga |
217 |
Q |
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| T |
48274975 |
ttggttttccaaatataattcaggtggtattgtgagcaacactttgcgccctccaattcctcaatcttgtgatccagaatggagtttgctgatggagaga |
48275074 |
T |
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| Q |
218 |
tgttggtcctcagagccgtcagagagacccaccttcacggacattgctgatgaattgcgttctatgtccatgtcaactaaacgccaaaatcaacagctac |
317 |
Q |
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| T |
48275075 |
tgttggtcctcagagccgtcagagagacccaccttcacggacattgctgatgaattgcgttctatgtcaatgtcaactaaacgccaaaatcaacagctac |
48275174 |
T |
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| Q |
318 |
aaccctcttc |
327 |
Q |
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| T |
48275175 |
aaccctcttc |
48275184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 246
Target Start/End: Original strand, 25245464 - 25245588
Alignment:
| Q |
122 |
ttttccaaatataattcaggtggtattgtgagcaacactttgcgccctccaattcctcaatcttgtgatccagaatggagtttgctgatggagagatgtt |
221 |
Q |
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| T |
25245464 |
ttttccaaacataattcaggtggaattgtgaacaacactttgcggcctccagttccagaatcttgtgatccagaatggagagtgctgatggagaggtgct |
25245563 |
T |
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| Q |
222 |
ggtcctcagagccgtcagagagacc |
246 |
Q |
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| T |
25245564 |
ggtcttcagaaccatcagaaagacc |
25245588 |
T |
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