View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2647_high_10 (Length: 237)
Name: NF2647_high_10
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 930448 - 930222
Alignment:
| Q |
1 |
attcaaagttttttattcctaaatcaccctcttttttgtcctaaca------attccaacaaaccgatgatgttttcataatttcctcatctccttgcca |
94 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
930448 |
attcaaagttttttattcctaaatctccctcttttttgtcctaacagattttattccaacaaacccatgatgttttcataatttcctcatctccttgcca |
930349 |
T |
|
| Q |
95 |
taggaatcttctctgcatctttgttagcaaatatatgactttcttaggatctttaaagaaggagaagaaataaagaggcagtgaagatgagacgtcggaa |
194 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
930348 |
taggaatcttctctgcatctttgttagcaaatatatgactttcttaggatctttaaagaaggagaagaaataaagaggcagtgaagatgagacgtcggaa |
930249 |
T |
|
| Q |
195 |
ctgatcaatgtcgctcgacctccaatt |
221 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
930248 |
ctgatcaatgtcgctcgacctccaatt |
930222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19256150 - 19256030
Alignment:
| Q |
1 |
attcaaagttttttattcctaaatcaccctcttttttgtcctaacaa------ttccaacaaaccgatgatgttttcataatttcctcatctccttgcca |
94 |
Q |
| |
|
|||||| |||||||| ||||||||| | ||||||| | |||||||| |||||||||||| ||||||||||| || |||||||||||||| ||| |
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| T |
19256150 |
attcaaggttttttactcctaaatctctctcttttctatcctaacagatttctttccaacaaacccatgatgttttcctattttcctcatctcctcccca |
19256051 |
T |
|
| Q |
95 |
taggaatcttctctgcatctt |
115 |
Q |
| |
|
|||||| ||||| | |||||| |
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| T |
19256050 |
taggaaccttctatccatctt |
19256030 |
T |
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