View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2647_high_8 (Length: 279)
Name: NF2647_high_8
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 52623876 - 52624121
Alignment:
| Q |
15 |
atgaatgaatggataccggattaagagtgttatggagcttgaaggtggtctcaagcatggatgattgctcctttgttagcctcagtttctttctacgatc |
114 |
Q |
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| T |
52623876 |
atgaatgaatggataccggattaagagtgttatggagcttgaaggtgctctcaagcatggatgattgctcctttgttagcctcagtttctttctacgatc |
52623975 |
T |
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| Q |
115 |
gttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggtgtctctccaaattgattctttcacccttgttgttgttgtgt |
214 |
Q |
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| T |
52623976 |
gttgttat---tgttgttatcagaatcagtgctacacgttacattttgataatattggtgtctctccaaattgattctttcacccttgttgttgttgtgt |
52624072 |
T |
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| Q |
215 |
acgttcataggttctccttttggacaaagctcaaaagctaggtcaaaac |
263 |
Q |
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| T |
52624073 |
acgttcataggttctccttttgaacaaagctcaaaagctaggtcaaaac |
52624121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 263
Target Start/End: Complemental strand, 40039619 - 40039433
Alignment:
| Q |
74 |
gatgattgctcctttgttagcctcagtttctttctacgatcgttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggt |
173 |
Q |
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| T |
40039619 |
gatgattgctcctttgttagcctcagtttttttctacgatcgttgttgtt---gttgttatcagaatcagggctacactttacattttgataatgttggt |
40039523 |
T |
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| Q |
174 |
gtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagctaggtcaaaac |
263 |
Q |
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| T |
40039522 |
gtctctccaaattgaatctttcacccttcttgttgttgtgtacgttcatagcttcttcttttggacaaagctcaaaagctaggtctaaac |
40039433 |
T |
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