View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2647_low_2 (Length: 452)
Name: NF2647_low_2
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 42657610 - 42658043
Alignment:
| Q |
22 |
gaacaataataaaatttgtcattgatcattaaaattcgatcatccttaaatagcagaaaaatattgggtatcaatcataacaaatagcaaaagataaccc |
121 |
Q |
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| T |
42657610 |
gaacaataataaaatttgtcattgatcattaaaattcgatcatccttaaatagcagaaaaatattgggtatcaatcataacaaatagcaaaagataaccc |
42657709 |
T |
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| Q |
122 |
aaactagaaatcaaagcttaaggacaagttcaccaacatctcaattgaaatccatca---------------ggattcaaggacgattagaaccaaaata |
206 |
Q |
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| T |
42657710 |
aaactagaaatcaaagcttaaggacaagttcaccaacatctcaattgaaatccatcactcactgtatggatgggattcaaggacgattagaaccaaaata |
42657809 |
T |
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| Q |
207 |
aaaataaaagctcatgt------tcttgttcatgtacaaaaagtcaagattctaaacaaaagctctctccaacaaaggagccaaaacgacgacgttttcc |
300 |
Q |
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| T |
42657810 |
aaaataaaaataaaaataaaagctcatgttcatgtacaaaaagtcaagattctaaacaaaagctctctccaacaaaggagccaaaacgacgacgttttcc |
42657909 |
T |
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| Q |
301 |
ttttccttgcaagactctaacaaagtcacctcagagagcatcttcacaaactcctccaaagacagcttcccgtacttatgttcattcttatgaagccgtt |
400 |
Q |
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| T |
42657910 |
ttttccttgcaagactctaacaaagtcacctcagagagcatcttcacaaactcctccaaagacagcttcccgtacttatgttcattcttatgaagccgtt |
42658009 |
T |
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| Q |
401 |
tgacgatttccgtgaaaaaattcacgtggcaagg |
434 |
Q |
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| T |
42658010 |
tgacgatttccgtgaaaaaattcacgtggcaagg |
42658043 |
T |
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