View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2647_low_3 (Length: 445)
Name: NF2647_low_3
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 40517482 - 40517840
Alignment:
| Q |
19 |
ggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattg |
118 |
Q |
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| T |
40517482 |
ggatcaacacaagcaacatgataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattg |
40517581 |
T |
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| Q |
119 |
aagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattga |
218 |
Q |
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| T |
40517582 |
aagttgaagaaccattcttctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattga |
40517681 |
T |
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| Q |
219 |
gtcttcatgacgatgtggtggaaaaccagacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaacc |
318 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517682 |
gtcttcatgacgatgtggtggaaaaccggacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaacc |
40517781 |
T |
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| Q |
319 |
aagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517782 |
aagaatacgagaccaaatacaagtattaagatatatgtgaacccatttgcgtcaaaacc |
40517840 |
T |
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