View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2647_low_4 (Length: 438)
Name: NF2647_low_4
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 36253405 - 36253000
Alignment:
| Q |
15 |
aatatcagaggctatggacgaagcaggatgagattgaactgttgaagggatatctagattacattaaacagcaaggaagagcaaatactactattcaaag |
114 |
Q |
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| T |
36253405 |
aatatcagaggctatggacgaagcaggatgagattgaactgttgaagggatatctagattacattaaacagcaaggaagagcaaatactactattcaaag |
36253306 |
T |
|
| Q |
115 |
cggcgtagcttcattctatgatcaagttattcccaaattcagcgtggaattcaataggaaccagcttgttgagaagctacgtaggttaaaaaggaaacac |
214 |
Q |
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| T |
36253305 |
cggcgtagcttcattctatgatcaagttattcccaaattcagcgtggaattcaataggaaccagcttgttgagaagctacgtaggttaaaaaggaaacac |
36253206 |
T |
|
| Q |
215 |
aagatgactttggacaaaggcaaagaggttcagatttctttcaaaatcccccaggaacaagccattttcgaaatttcccacaagatttggggcaatgaca |
314 |
Q |
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| T |
36253205 |
aagatgactttggacaaaggcaaagaggttcagatttctttcaaaatcccccaggaacaagccattttcgaaatttcccacaagatttggggcaatgaca |
36253106 |
T |
|
| Q |
315 |
cggaccatgacgttttggatgttgatgattcaagacctgttcctgaaagtcctgatcttattgagaacattaagttgaaggcggaagatgttgacaattg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36253105 |
cggaccatgacgttttggatgttgatgattcaagacctgttcctgaaagtcctgatcttattgagaacattaagttgaaggcggaagatgttgacaattg |
36253006 |
T |
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| Q |
415 |
tgaaga |
420 |
Q |
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|||||| |
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| T |
36253005 |
tgaaga |
36253000 |
T |
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