View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2647_low_7 (Length: 282)
Name: NF2647_low_7
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2647_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 82 - 267
Target Start/End: Complemental strand, 7422786 - 7422601
Alignment:
| Q |
82 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422786 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
7422687 |
T |
|
| Q |
182 |
tctaataccatattcctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctg |
267 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7422686 |
tctaataccatattcatgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctg |
7422601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 7512262 - 7512166
Alignment:
| Q |
84 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
179 |
Q |
| |
|
||||||| |||||| | |||||||| ||| | ||| |||||||||||||||||||| ||||| || || |||| |||| |||||| ||||||||||| |
|
|
| T |
7512262 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7512166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 7516546 - 7516450
Alignment:
| Q |
84 |
tgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgccttta-tagttggaaat |
179 |
Q |
| |
|
||||||| |||||| | |||||||| ||| | ||| |||||||||||||||||||| ||||| || || |||| |||| |||||| ||||||||||| |
|
|
| T |
7516546 |
tgttgaagtgcaaattatgtgattggtttgacatctctggctccttggtaatcaaccggtggtttcccaggggcaaacacctttattagttggaaat |
7516450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 36638094 - 36638212
Alignment:
| Q |
82 |
cctgttgaattgcaaactctgtgattgctttcagatccctggctccttggtaatcaacgggtggctttccgggggaaaacgcctttatagttggaaatcc |
181 |
Q |
| |
|
||||||||| |||||| |||| ||| | ||| | || |||||||||||||||||||| ||||| ||||| || |||||| ||||||||||||||||||| |
|
|
| T |
36638094 |
cctgttgaagtgcaaattctgcgatcggtttaacgtctctggctccttggtaatcaactggtggttttccaggtgaaaacacctttatagttggaaatcc |
36638193 |
T |
|
| Q |
182 |
tctaataccatattcctga |
200 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36638194 |
tctaataccatattcctga |
36638212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 36639114 - 36639185
Alignment:
| Q |
196 |
cctgagccagagacttgtgagcatcagcatcaagtgctgccacagtaactacaccctttaatacagtagctg |
267 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
36639114 |
cctgagccagagattggtgagcatcagcatcaagtgctgctacagtaactacaccctttaacacagtagctg |
36639185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University