View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2647_low_9 (Length: 262)

Name: NF2647_low_9
Description: NF2647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2647_low_9
NF2647_low_9
[»] chr6 (6 HSPs)
chr6 (44-247)||(5620313-5620514)
chr6 (47-172)||(19268753-19268879)
chr6 (44-172)||(33523430-33523559)
chr6 (202-260)||(33523592-33523650)
chr6 (202-247)||(19268673-19268718)
chr6 (202-247)||(2946287-2946332)
[»] chr7 (10 HSPs)
chr7 (44-260)||(46526333-46526544)
chr7 (44-260)||(6272768-6272982)
chr7 (44-260)||(42014130-42014343)
chr7 (44-169)||(41964325-41964451)
chr7 (47-172)||(45075571-45075698)
chr7 (44-132)||(10554603-10554692)
chr7 (44-172)||(31593814-31593942)
chr7 (202-241)||(45415236-45415275)
chr7 (202-247)||(41964487-41964532)
chr7 (202-234)||(45075528-45075560)
[»] chr5 (8 HSPs)
chr5 (44-260)||(10825630-10825842)
chr5 (44-172)||(7262930-7263060)
chr5 (44-172)||(23067172-23067301)
chr5 (44-172)||(19876575-19876704)
chr5 (44-172)||(37980260-37980388)
chr5 (202-260)||(7263093-7263151)
chr5 (202-247)||(23067337-23067382)
chr5 (44-131)||(24169539-24169627)
[»] chr3 (13 HSPs)
chr3 (44-260)||(45034667-45034878)
chr3 (44-260)||(48164800-48165010)
chr3 (44-260)||(18942914-18943127)
chr3 (44-247)||(177751-177950)
chr3 (44-164)||(52561083-52561204)
chr3 (94-260)||(18911888-18912050)
chr3 (40-172)||(55150826-55150959)
chr3 (94-172)||(10824-10902)
chr3 (46-89)||(18908196-18908239)
chr3 (202-247)||(23585220-23585265)
chr3 (202-247)||(23600043-23600088)
chr3 (202-247)||(52561249-52561294)
chr3 (54-82)||(9192-9220)
[»] chr8 (7 HSPs)
chr8 (44-260)||(41269854-41270067)
chr8 (44-247)||(44115848-44116047)
chr8 (44-170)||(42095767-42095894)
chr8 (45-172)||(8317040-8317168)
chr8 (44-140)||(20477649-20477746)
chr8 (202-247)||(18701080-18701125)
chr8 (202-247)||(42095687-42095732)
[»] chr2 (12 HSPs)
chr2 (44-260)||(31501048-31501264)
chr2 (44-260)||(19508506-19508718)
chr2 (44-172)||(26393745-26393874)
chr2 (44-172)||(40612850-40612979)
chr2 (44-169)||(4174770-4174896)
chr2 (44-170)||(2777141-2777268)
chr2 (44-140)||(2119883-2119980)
chr2 (47-134)||(34458512-34458600)
chr2 (202-260)||(26393906-26393964)
chr2 (201-260)||(2119760-2119819)
chr2 (202-247)||(15738124-15738169)
chr2 (202-234)||(4174936-4174968)
[»] chr1 (10 HSPs)
chr1 (44-260)||(31387523-31387733)
chr1 (44-251)||(42463548-42463750)
chr1 (44-260)||(46192209-46192420)
chr1 (44-260)||(4911852-4912063)
chr1 (44-260)||(27105940-27106153)
chr1 (44-172)||(15291587-15291716)
chr1 (44-172)||(50914873-50915002)
chr1 (44-172)||(18242948-18243077)
chr1 (44-111)||(42055809-42055877)
chr1 (202-247)||(15291508-15291553)
[»] scaffold1043 (2 HSPs)
scaffold1043 (44-172)||(2965-3094)
scaffold1043 (202-234)||(2890-2922)
[»] chr4 (3 HSPs)
chr4 (44-247)||(54602476-54602677)
chr4 (44-172)||(39388810-39388939)
chr4 (44-171)||(12024884-12025012)
[»] scaffold0688 (1 HSPs)
scaffold0688 (53-172)||(5432-5552)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 247
Target Start/End: Original strand, 5620313 - 5620514
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||| |    
T  5620313 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtcgccctgcccttacgtatcagattgccaggcggcgcagggagccgaggcat 5620412  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  5620413 gctaggcagcagggttgattatgattaggc---ttttttttttatgtacttttttactatgatgtataattatgacacattccgtacattttgatatttg 5620509  T
Q  243 tatga 247  Q
    |||||    
T  5620510 tatga 5620514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 19268879 - 19268753
Alignment:
Q  47 taaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtgct 145  Q
    |||||| ||||||||||| |||||||| | |||||||  |||| ||| |||| ||| ||||||||| |||||||||||||||||||||| ||||| || |    
T  19268879 taaagaggagattgtccaagaggtgattcagatagccagtactggtcgccctgcccatacgtatcagattgccaggcggcgcagggggcagaggcatggt 19268780  T
Q  146 aggcagcagggttgattatgattaggc 172  Q
    ||||||||||||||||| |||||||||    
T  19268779 aggcagcagggttgattctgattaggc 19268753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 33523430 - 33523559
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||| || |||||||||||||||||||| || ||||||  |||| | | |||| ||||||| ||||| ||||| |||||||||||||||| | |||      
T  33523430 gactaaggaggagattgtccaggaggtgatacgaatagccagtactggccgccctgcccttacatatcagattgctaggcggcgcagggggcagcggcag 33523529  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | ||| ||| ||||||||||||||||||||    
T  33523530 ggtagacagtagggttgattatgattaggc 33523559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 33523592 - 33523650
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatgatattcttcgacat 260  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| ||| | ||||||    
T  33523592 tgatgtataattatgacatgttccgtacattttcgtatttctatgacattttccgacat 33523650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 19268718 - 19268673
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  19268718 tgatgtataattatgacatgttccgtacattttcgtatttctatga 19268673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 2946287 - 2946332
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||    
T  2946287 tgatatataattatgacatgttccgtatattttggtatttctatga 2946332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 46526544 - 46526333
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  46526544 gactaaagaggagattgtccagtaggtgatgcggatagccggtactagtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcat 46526445  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||||||||||||              ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  46526444 gctaggcagcagggttgattatgattagg------gtttttttatgtacttttttactgtgacgtataattatgacatgttccttacattttggtatttg 46526351  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  46526350 tatgacattttccgacat 46526333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 6272982 - 6272768
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| ||| |||||||||||||||||||||||| |    
T  6272982 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcaccctgcccttacgtatcagatttccaggcggcgcagggggccgaggcat 6272883  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||||| | | ||||||||||||| |              ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  6272882 gctaggcagtaagattgattatgattaag---gttttttttttatgtacttttttactgtgatgtataattatgacatgtttcgtacattttggtatttg 6272786  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  6272785 tatgacattttccgacat 6272768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 42014130 - 42014343
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||||||  ||||| ||||||||||||||||| |||||| |||| ||| |||| ||||||||||||| ||||| |||||| ||||||||||||||| |    
T  42014130 gactaaagagaagattttccaggaggtgatgcgggtagccggtactggtcgccctacccttacgtatcagattgctaggcggagcagggggccgaggcat 42014229  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||| ||||||||||||||||              ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||    
T  42014230 gctaggcagcagagttgattatgattagg----gtttttttttatgtacttttttactgttatgtataattatgacatattccgtacattttggtatttg 42014325  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  42014326 tatgacattttccgacat 42014343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 41964325 - 41964451
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||| || ||||||||| |||||| |    
T  41964325 gactaaagaggagattttccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccagacgacgcagggggtcgaggcat 41964424  T
Q  143 gctaggcagcagggttgattatgatta 169  Q
    ||||||||| |||||||||||||||||    
T  41964425 gctaggcagtagggttgattatgatta 41964451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 45075698 - 45075571
Alignment:
Q  47 taaagaagagattgtccaggaggtgatgcggatagccgatactagtccccttc-ccttacgtatcaaattgccaggcggcgcagggggc-cgaggcgtgc 144  Q
    |||||| |||||| |||| ||||||||||||||||||| ||||  || || |  |||||||||||| |||||||||||||| ||||||  |||||| |||    
T  45075698 taaagaggagattatccaagaggtgatgcggatagccggtactgatcaccatatccttacgtatcagattgccaggcggcgtagggggggcgaggcatgc 45075599  T
Q  145 taggcagcagggttgattatgattaggc 172  Q
    |||||| |||||||||||||||||||||    
T  45075598 taggcaacagggttgattatgattaggc 45075571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 10554603 - 10554692
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggg 132  Q
    ||||||||| |||||| ||||||||||||||  ||||||   |||||||| |||| ||||||| ||||||||||||||||| ||||||||    
T  10554603 gactaaagaggagattatccaggaggtgatgtagatagctagtactagtcgccctgcccttacttatcaaattgccaggcgacgcagggg 10554692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 31593814 - 31593942
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||| ||| ||||  |||||||||||||   |||||||| |||| ||||||| ||||| ||| ||||||||||||||||   |||||      
T  31593814 gactaaagaggagatcgtctaggatttgatgcggatagctagtactagtcgccctgcccttacttatcagatttccaggcggcgcaggggta-gaggcag 31593912  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | |||||||||||| ||||||| |||||||    
T  31593913 ggtaggcagcagggctgattattattaggc 31593942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 45415236 - 45415275
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtattt 241  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  45415236 tgatgtataattatgacatgttccgtacatttttgtattt 45415275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 41964487 - 41964532
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||    
T  41964487 tgatgtataattatgacatgttccgtacattttcttatttctatga 41964532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 45075560 - 45075528
Alignment:
Q  202 tgatgtataattatgacatgttccgtacatttt 234  Q
    |||||||||||||||||||||| ||||||||||    
T  45075560 tgatgtataattatgacatgtttcgtacatttt 45075528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 10825842 - 10825630
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  10825842 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcat 10825743  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||||| |||||||||| |||||||||             ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  10825742 gctaggcagtagggttgattgtgattaggc-----ttttttttatgtactttttgactgtgatgtataattatgacatgttccgtacattttggtatttc 10825648  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  10825647 tatgacattttccgacat 10825630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 7262930 - 7263060
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggg-gccgaggcg 141  Q
    ||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||| |||||||||||||||| ||||||||     
T  7262930 gactaaagaggatattgtccaggaggtgatgcggatagccggtactggtcgcccttcccttacgtatcagattaccaggcggcgcaggggggccgaggca 7263029  T
Q  142 tgctaggcagcagggttgattatgattaggc 172  Q
    |||||||||||||||||||||||||| ||||    
T  7263030 tgctaggcagcagggttgattatgataaggc 7263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 23067172 - 23067301
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||| ||| |||| ||||||||||||| ||| ||||||||||||||||||||||||      
T  23067172 gactaaagaggagattgtccaggaggtgatggggatagccggtactggtcgccctgcccttacgtatcagattaccaggcggcgcagggggccgaggcaa 23067271  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    ||||||||  || |||||||||||||||||    
T  23067272 gctaggcaatagagttgattatgattaggc 23067301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 19876575 - 19876704
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||||| |||||| ||| |||||| |    
T  19876575 gactaaagaggagattgtctaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcagcgcagaggggcgaggcat 19876674  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    |||| |||| |||||| |||||||||||||    
T  19876675 gctacgcagtagggttaattatgattaggc 19876704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 37980388 - 37980260
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||| |||||||||| |||||| | |||||||| |||| ||||||| ||||| |||||||||||||| ||||| | |||||      
T  37980388 gactaaagaggagattgtccacgaggtgatgctgatagcag-tactagtcgccctgcccttacttatcagattgccaggcggcgtaggggtcagaggcag 37980290  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | ||| |||||||| ||||||| |||||||    
T  37980289 ggtagacagcagggctgattattattaggc 37980260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 7263093 - 7263151
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatgatattcttcgacat 260  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||| ||| | ||||||    
T  7263093 tgatgtataattatgacatgttccgtacatttttttatttctatgacattttccgacat 7263151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 23067337 - 23067382
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||    
T  23067337 tgatgtataattatgacatgttccgtacattttcttatttctatga 23067382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 24169539 - 24169627
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcaggg 131  Q
    ||||||| | |||||||||||||||||||||||||||||   ||||||||   || ||||||  ||||| |||| ||||||||||||||    
T  24169539 gactaaaaaggagattgtccaggaggtgatgcggatagctagtactagtcgtactgcccttaattatcagattgtcaggcggcgcaggg 24169627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 45034667 - 45034878
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||| ||| |||||||||||||||||||||||||| ||| ||||  || |||  |||||||||||||||||||||||||||||||||||||||||| |    
T  45034667 gactaatgaaaagattgtccaggaggtgatgcggatatccggtactgatcgccccgcccttacgtatcaaattgccaggcggcgcagggggccgaggcat 45034766  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||||||||||||              ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  45034767 gctaggcagcagggttgattatgattagg------gtttttttatgtacttttttactctgatgtataattatgacatgttccgtatattttggtatttg 45034860  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  45034861 tatgacattttccgacat 45034878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 48164800 - 48165010
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| || |||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||| |||||||||||||||| |||||| |    
T  48164800 gactaaagaggatattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgtcaggcggcgcagggggtcgaggcat 48164899  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||||||||||||              ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  48164900 gctaggcagcagggttgattatgattagg------gtttttttatgtacttttttactgtgatg-ataattatgacatgttccgtacattttggtatttg 48164992  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  48164993 tatgacattttccgacat 48165010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 18943127 - 18942914
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||| |||||| |||||||| |||||| |    
T  18943127 gactaaagaggagattgtccaggaggtgatacggatagccggtactggtcgccctgcccttacgtatcaaattgcgaggcggtgcagggggtcgaggcat 18943028  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||||||||||||              ||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||    
T  18943027 gctaggcagcagggttgattatgattagg----gtttttttttatgtactttgtgactgtgatttataattatgacatgttccgtacattttggtatttg 18942932  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  18942931 tatgacattttccgacat 18942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 177950 - 177751
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||||||  |||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| |||||||||||||  ||||||||||||| |    
T  177950 gactaaagagaagattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcatagggggccgaggcat 177851  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||| ||||||||||||||||||| |             ||||||||||| | | | | ||||||||||||||||||||||||||||||||||||     
T  177850 gctaggcaacagggttgattatgattagac-----ttttttttatgtactttttgaatgtaaagtataattatgacatgttccgtacattttggtatttc 177756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 52561083 - 52561204
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||| || |||| ||||||||||||||||||||||| |    
T  52561083 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtaacagattgtcaggcggcgcagggggccgaggcat 52561182  T
Q  143 gctaggcagcagggttgattat 164  Q
    ||||||||| ||||||||||||    
T  52561183 gctaggcagtagggttgattat 52561204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 18911888 - 18912050
Alignment:
Q  94 cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtgctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtactt 193  Q
    |||| ||||||| ||||| ||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||              ||| ||||    
T  18911888 ccctgcccttacatatcagattgccaggcggcgcagggggccaaagcatgctaggcagcaaggttgattatgattagg---tttttttttttatgcactt 18911984  T
Q  194 ttttactatgatgtataattatgacatgttccgtacattttggtatttgtatgatattcttcgacat 260  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  18911985 ttt-actgtgatgtataattatgacatgttccgtacattttggtatttgtatgacattttccgacat 18912050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 55150826 - 55150959
Alignment:
Q  40 agaggactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgag 138  Q
    ||||||||||||| ||||| ||| ||||||||||||||||| |   |||||||| |||| ||||||| ||||| |||||||||||||||||||||| |||    
T  55150826 agaggactaaagaggagatcgtctaggaggtgatgcggataactagtactagtcgccctgcccttacttatcagattgccaggcggcgcagggggcagag 55150925  T
Q  139 gcgtgctaggcagcagggttgattatgattaggc 172  Q
    ||  | ||||||||| |  ||||||| |||||||    
T  55150926 gcagggtaggcagcatgactgattattattaggc 55150959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 10824 - 10902
Alignment:
Q  94 cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtgctaggcagcagggttgattatgattaggc 172  Q
    |||| ||||||| ||||| |||| ||||||||||||||||| |||||  | |||||||||||| ||||||| |||||||    
T  10824 ccctgcccttacttatcagattgtcaggcggcgcagggggcagaggcagggtaggcagcagggctgattattattaggc 10902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 18908196 - 18908239
Alignment:
Q  46 ctaaagaagagattgtccaggaggtgatgcggatagccgatact 89  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  18908196 ctaaagaggagattgtccaggaggtgatgcggatagccggtact 18908239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 23585220 - 23585265
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||    
T  23585220 tgatgtataactatgacatgttccgtacatttttgtatttctatga 23585265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 23600043 - 23600088
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||    
T  23600043 tgatgtataactatgacatgttccgtacatttttgtatttctatga 23600088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 52561249 - 52561294
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||    
T  52561249 tgatgtataattatgacatgttccgtacattttcttatttctatga 52561294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 9192 - 9220
Alignment:
Q  54 gagattgtccaggaggtgatgcggatagc 82  Q
    |||||||||||||||||||||||||||||    
T  9192 gagattgtccaggaggtgatgcggatagc 9220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 41269854 - 41270067
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||||| |||| |    
T  41269854 gactaaagaggagattgtccaagaggtgatgcggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccaaggcat 41269953  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtac-ttttttactatgatgtataattatgacatgttccgtacattttggtattt 241  Q
    |||||||||||||||||||||||||||||              || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41269954 gctaggcagcagggttgattatgattagg-----gttttttttatttactttttttactgtgatgtataattatgacatgttccgtacattttggtattt 41270048  T
Q  242 gtatgatattcttcgacat 260  Q
     ||||| ||| | ||||||    
T  41270049 atatgacattttccgacat 41270067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 44116047 - 44115848
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||  ||| |||| ||||||||||||| ||||| ||| |||||||||||| || || |    
T  44116047 gactaaagaggagattgtccaggaggtgatgcggatagccggtaccggtcgccctgcccttacgtatcagattgctaggtggcgcagggggctgatgcat 44115948  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||||| |||||||||| |||||||||             ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  44115947 gctaggcagtagggttgattgtgattaggc-----ttttttttatgtactttttgactgtgatgtataattatgacatgttccgtacattttggtatttc 44115853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 42095894 - 42095767
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||||||||||||||||||||||| || || | ||| |||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  42095894 gactaaagaggagattgtccaggaggtgatgcggatagtcggtattggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcat 42095795  T
Q  143 gctaggcagcagggttgattatgattag 170  Q
    ||||||||||| |||| |||||||||||    
T  42095794 gctaggcagcaaggttcattatgattag 42095767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 8317168 - 8317040
Alignment:
Q  45 actaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtg 143  Q
    |||||| | |||||||||||||||||||||||||||||   |||||||| |||| ||||||| ||||| |||||||||||||||| | ||| ||| | ||    
T  8317168 actaaataggagattgtccaggaggtgatgcggatagctactactagtcgccctgcccttacttatcagattgccaggcggcgcatgaggcagagacatg 8317069  T
Q  144 ctaggcagcagggttgattatgattaggc 172  Q
    ||||| ||||||||||||| |||||||||    
T  8317068 ctaggtagcagggttgattgtgattaggc 8317040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 20477746 - 20477649
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggc 140  Q
    ||||||||| ||||| |||||||||||||||||||||||   |||||||| |||| ||||||| ||||| ||||| |||||||||||||||| |||||    
T  20477746 gactaaagaggagatcgtccaggaggtgatgcggatagctagtactagtcgccctgcccttacttatcatattgcgaggcggcgcagggggcagaggc 20477649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 18701125 - 18701080
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||| ||||||||||||| |||||||||| |||||| |||||    
T  18701125 tgatgtattattatgacatgtttcgtacattttagtatttctatga 18701080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 42095732 - 42095687
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    ||||||||||| |||||||||||||||||||||  ||||| |||||    
T  42095732 tgatgtataataatgacatgttccgtacattttattatttctatga 42095687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 31501264 - 31501048
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtcccctt-cccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| || |||||||||||||||||| ||||||||| |||| ||| |||| ||||||||||||| |||  |||||| |||||||||||||||| |    
T  31501264 gactaaagaggatattgtccaggaggtgatgtggatagccggtactggtcgccttgcccttacgtatcagattttcaggcgacgcagggggccgaggcat 31501165  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||| |||||||||             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  31501164 gctaggcagcagggttgattgtgattaggc-ttttttttttttatgtactttttgactatgatgtataattatgacatgttccgtacattttggtatttc 31501066  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  31501065 tatgacattttccgacat 31501048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 19508506 - 19508718
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtccccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtg 143  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| | |  |||||||||||| ||||||||||||| ||||||||| |||| ||    
T  19508506 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgcatgtccttacgtatcagattgccaggcggcacagggggccaaggcatg 19508605  T
Q  144 ctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttgt 243  Q
    ||||||||||| ||||||||||||||||              ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||| |    
T  19508606 ctaggcagcagtgttgattatgattagg----gtttttttttatgtacttttggactgtgatgtataattatgacatgttccgtacattttggtatttct 19508701  T
Q  244 atgatattcttcgacat 260  Q
    |||| ||| | ||||||    
T  19508702 atgacattttccgacat 19508718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 26393745 - 26393874
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||| ||||||||  |||| ||  |||| ||||||||||||| ||| || |||| |||||||||||||||| |    
T  26393745 gactaaagaggagattgtccaggaggtgatgtggatagccagtactggttgccctgcccttacgtatcagattacccggcgacgcagggggccgaggcat 26393844  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    ||||| ||||||||||||||||||||||||    
T  26393845 gctagtcagcagggttgattatgattaggc 26393874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 40612979 - 40612850
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||| |||||||||||||||| |||| ||||  || |||| ||| ||||||||| |||| |||| |||||||||||| ||||| |    
T  40612979 gactaaagaggagattgtctaggaggtgatgcggatggccggtactgatcgccctgcccgtacgtatcagattgtcaggtggcgcagggggcagaggcat 40612880  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | ||||||||||||||||||||||||||||    
T  40612879 ggtaggcagcagggttgattatgattaggc 40612850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 4174770 - 4174896
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| || |||||||||| ||||||| ||||||| | ||| |||||  |    
T  4174770 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgccgttacgtatcagattgccaagcggcgctgtgggtcgaggtat 4174869  T
Q  143 gctaggcagcagggttgattatgatta 169  Q
    ||||||||| |||||||||||| ||||    
T  4174870 gctaggcagtagggttgattataatta 4174896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 2777141 - 2777268
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagt-ccccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||||||||||||||||||||||||   |||||||  |||| ||||||| ||||| ||| |||||||||||||||||| |||||      
T  2777141 gactaaagaggagattgtccaggaggtgatgcggatagctagtactagtggccctccccttacttatcagatttccaggcggcgcagggggcagaggcag 2777240  T
Q  143 gctaggcagcagggttgattatgattag 170  Q
    | ||||||||| || ||||||| |||||    
T  2777241 ggtaggcagcatggctgattattattag 2777268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 2119980 - 2119883
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtcccctt-cccttacgtatcaaattgccaggcggcgcagggggccgaggc 140  Q
    ||||||||| |||||||||||||||||||||||||||||   |||||||| | || ||||||| ||||| |||  ||||||||||||||||| |||||    
T  2119980 gactaaagaggagattgtccaggaggtgatgcggatagctagtactagtcgcgttgcccttacttatcagattttcaggcggcgcagggggcagaggc 2119883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 34458512 - 34458600
Alignment:
Q  47 taaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggc 134  Q
    |||||| | |||||||||||||||||| | |||||| | |||  ||| |||| ||||||| ||||| ||||||||||||||||||||||    
T  34458512 taaagaggtgattgtccaggaggtgatacagatagcaggtaccggtctccctgcccttacatatcagattgccaggcggcgcagggggc 34458600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 26393906 - 26393964
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatgatattcttcgacat 260  Q
    |||||||||||||||||||||||| ||||||||  ||||| ||||| ||| ||||||||    
T  26393906 tgatgtataattatgacatgttccatacatttttttatttctatgacatttttcgacat 26393964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 2119819 - 2119760
Alignment:
Q  201 atgatgtataattatgacatgttccgtacattttggtatttgtatgatattcttcgacat 260  Q
    ||||||||| ||| ||||||||||||||||||||| ||||| ||||| ||| ||| ||||    
T  2119819 atgatgtattattgtgacatgttccgtacattttgatatttctatgacatttttcaacat 2119760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 15738169 - 15738124
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||| ||||||||||||| |||||||||| |||||| |||||    
T  15738169 tgatgtattattatgacatgtttcgtacattttagtatttctatga 15738124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 4174936 - 4174968
Alignment:
Q  202 tgatgtataattatgacatgttccgtacatttt 234  Q
    ||||||||||||||||||||||| |||||||||    
T  4174936 tgatgtataattatgacatgttctgtacatttt 4174968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 31387523 - 31387733
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||| |||||||||||||||| ||||||||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  31387523 gactaaagaggagactgtccaggaggtgatgtggatagccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcat 31387622  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    |||||||||||||||||||| |||||||||             | ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||     
T  31387623 gctaggcagcagggttgattgtgattaggc-------ttttttacgtactttttgactgtgatgtataattatgacatgttccgtacattttgatatttc 31387715  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  31387716 tatgacattttccgacat 31387733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 42463750 - 42463548
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||| || ||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||| | |||| |||||||||||||| |||||||| |    
T  42463750 gactaacgaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtattagattgtcaggcggcgcagggagccgaggcat 42463651  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||| ||| ||||||||  ||||||||             ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||     
T  42463650 gctaggccgcatggttgattgcgattaggc------tttttttatgtactttttcactgtgatgtataattatgacatgtttcgtacattttggtatttc 42463557  T
Q  243 tatgatatt 251  Q
    |||||||||    
T  42463556 tatgatatt 42463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 46192420 - 46192209
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||||| |||||||||||||||| ||| |||||||| |||| |||||| |||||| |||| |||||| || ||||||||||||| |    
T  46192420 gactaaagaggagattgtcctggaggtgatgcggataaccggtactagtcgccctccccttatgtatcagattgtcaggcgacgtagggggccgaggcat 46192321  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
     |||||||||| | |||||||||||||| |             ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  46192320 tctaggcagcacgtttgattatgattagac------tttttttatgtaatttttgactgtgatgtataattatgacatgttccgtacattttggtatttg 46192227  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| ||| ||||    
T  46192226 tatgacatttttcaacat 46192209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 4912063 - 4911852
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    |||||||||  ||||||||||||||||||||||| |||||| || | ||| |||| ||||||  ||||| |||||||||||||||||||||| ||||| |    
T  4912063 gactaaagagaagattgtccaggaggtgatgcgggtagccggtattggtcgccctgcccttatatatcagattgccaggcggcgcagggggctgaggcat 4911964  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
     |||||||||| |||||||| |||||||||             ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||     
T  4911963 actaggcagcatggttgattgtgattaggc------tttttttatgtactttttgattgtgatgtataattatgacatgttccgtacattttggtatttc 4911870  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  4911869 tatgacattttccgacat 4911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 260
Target Start/End: Complemental strand, 27106153 - 27105940
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||| ||| |||| |||||| |||||| |||| ||||||||| ||||||||||||| |    
T  27106153 gactaaagaggagattttccaggaggtgatgcggatagccggtactggtcgccctgcccttatgtatcagattgtcaggcggcgtagggggccgaggcat 27106054  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtacttttttactatgatgtataattatgacatgttccgtacattttggtatttg 242  Q
    ||||||||||| |||||||| |||||||||             ||||| ||||| ||| |||  ||||||||||||||||| |||||||||||||||||     
T  27106053 gctaggcagcatggttgattgtgattaggc----tttttttttatgtattttttgactgtgacatataattatgacatgtttcgtacattttggtatttc 27105958  T
Q  243 tatgatattcttcgacat 260  Q
    ||||| ||| | ||||||    
T  27105957 tatgacattttccgacat 27105940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 15291716 - 15291587
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtcc-ccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||| | |||||||||||||||||||| |||||||||| || | |||  ||| ||||||||||||| ||||||||||||||||| |||||||||| |    
T  15291716 gactaaataggagattgtccaggaggtgatacggatagccggtattggtcgtcctgcccttacgtatcagattgccaggcggcgcagagggccgaggcat 15291617  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    ||||||||| | ||||||||||||||||||    
T  15291616 gctaggcagtaaggttgattatgattaggc 15291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 50914873 - 50915002
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||| |||||||||||||||||||||||   |||||| | |||| ||||||| |||||||||| ||||||||||||||| | ||||       
T  50914873 gactaaagaggagatcgtccaggaggtgatgcggatagctagtactagccgccctgcccttacttatcaaattgtcaggcggcgcaggggccagaggtag 50914972  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | |||||||||||| ||||||| |||||||    
T  50914973 ggtaggcagcagggctgattattattaggc 50915002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 18242948 - 18243077
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||| ||| |||||||||| | |||| |   |||||||| |||| ||||||| ||||| |||||||||||||||||||||| |||||      
T  18242948 gactaaagaggagatcgtctaggaggtgatacagatatctagtactagtcgccctgcccttacttatcagattgccaggcggcgcagggggcagaggcag 18243047  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    | |||||||||||| ||||||| |||||||    
T  18243048 ggtaggcagcagggctgattattattaggc 18243077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 42055877 - 42055809
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatca 111  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||    
T  42055877 gactaaagaggagattgtccaggaggtgatgcggatagccggtactggtcgccctgcccttacgtatca 42055809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 15291553 - 15291508
Alignment:
Q  202 tgatgtataattatgacatgttccgtacattttggtatttgtatga 247  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||    
T  15291553 tgatgtataattatgacatgttccgtacatttttttatttctatga 15291508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 3094 - 2965
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  3094 gactaaagaggagattgtccaggaggtgatgcggatatccggtactggtcgccctgcccttacgtatcagattgccaggcggcgcagggggccgaggcgt 2995  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    |||||||| |||||||||||||||||||||    
T  2994 gctaggcaacagggttgattatgattaggc 2965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 2922 - 2890
Alignment:
Q  202 tgatgtataattatgacatgttccgtacatttt 234  Q
    |||||||||||||||||||||||||||||||||    
T  2922 tgatgtataattatgacatgttccgtacatttt 2890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 247
Target Start/End: Complemental strand, 54602677 - 54602476
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| || ||||||||||||||||||| ||| |  | |||| ||| |||| ||||||||||| | |||||||||||||||||||||||||||| |    
T  54602677 gactaaagaggaaattgtccaggaggtgatgcagattgttggtactggtcgccctgcccttacgtattagattgccaggcggcgcagggggccgaggcat 54602578  T
Q  143 gctaggcagcagggttgattatgattaggcnnnnnnnnnnnnnatgtac-ttttttactatgatgtataattatgacatgttccgtacattttggtattt 241  Q
    |||||||||||||||||||||  |||| |               ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  54602577 gctaggcagcagggttgattaaaattaag----gtttttttttttgtactttttttactgtgatgtataattatgacatgttccatacattttggtattt 54602482  T
Q  242 gtatga 247  Q
    ||||||    
T  54602481 gtatga 54602476  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 39388939 - 39388810
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||| ||| ||||  |||||||||||| ||||||||| |||| |||||||  |||| |    
T  39388939 gactaaagaggagattgttcaggaggtgatgcggatagccggtactggtcgccctgaccttacgtatcagattgccaggtggcgtagggggctaaggcat 39388840  T
Q  143 gctaggcagcagggttgattatgattaggc 172  Q
    ||||||||| ||||||||||||||||||||    
T  39388839 gctaggcagtagggttgattatgattaggc 39388810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 12025012 - 12024884
Alignment:
Q  44 gactaaagaagagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgt 142  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||| ||| ||||||||| |||||||||||||| |    
T  12025012 gactaaagaggagattgtccaggaggtgatgcggatacccggtactggtcgccctgcccttacgtatcagattaccaggcggcacagggggccgaggcat 12024913  T
Q  143 gctaggcagcagggttgattatgattagg 171  Q
    || ||| |||| |||| | ||||||||||    
T  12024912 gccaggaagcatggttaactatgattagg 12024884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 5432 - 5552
Alignment:
Q  53 agagattgtccaggaggtgatgcggatagccgatactagtc-cccttcccttacgtatcaaattgccaggcggcgcagggggccgaggcgtgctaggcag 151  Q
    |||||| |||||||||||||||||||||||   |||||||| |||| ||||||| ||| | ||||| |||||||||||||||| |||||  | |||||||    
T  5432 agagatcgtccaggaggtgatgcggatagctagtactagtcgccctgcccttacttattagattgctaggcggcgcagggggcagaggcaaggtaggcag 5531  T
Q  152 cagggttgattatgattaggc 172  Q
    ||||| ||||||| |||||||    
T  5532 cagggctgattattattaggc 5552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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