View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2648_high_12 (Length: 246)
Name: NF2648_high_12
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13395602 - 13395828
Alignment:
| Q |
1 |
atgacatttgaaagtgagtgtgtgtctgtgtgtatataaatcatatatcttttacgcgtgactgtatagactaatcgatcgagttagataggaactcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13395602 |
atgacatttgaaagtgagtgtgtgtatgtgtgtatataaatcatatatcttttacgcgcgactgtatagactaatcgatcgagtcatataggaactcaat |
13395701 |
T |
|
| Q |
101 |
gagtgacaaagttgtccctcaaggaatttaacaccacttaatttctaagtttggatttgaactcaggatcgctggttaaattagaaaataacccttacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13395702 |
gagtgacaaagttgtccctcaaggaatttaacaccatttaatttctaagattggatttgaactcaggatcgctggttaaattagaagataacccttacca |
13395801 |
T |
|
| Q |
201 |
tatatcatctaatattgaggtcggggg |
227 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
13395802 |
tatatcatttaatattgaggtcggggg |
13395828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University