View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_high_2 (Length: 707)
Name: NF2648_high_2
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 630
Target Start/End: Original strand, 15180297 - 15180938
Alignment:
| Q |
11 |
cacagaaggaattaaagttcaaagttgccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagataa |
110 |
Q |
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| T |
15180297 |
cacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaa |
15180396 |
T |
|
| Q |
111 |
ttt-cgggaactgcaattgatcttgctagcaatgacaatgctatcaccgat---------------------attggaattgttgttaggggacaagcta |
188 |
Q |
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| T |
15180397 |
ttttctggaactgcaattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagcta |
15180496 |
T |
|
| Q |
189 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataa |
288 |
Q |
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| T |
15180497 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataa |
15180596 |
T |
|
| Q |
289 |
ttgttacatggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttttttcttaggggatgctaatattgttttgaagtca |
388 |
Q |
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| T |
15180597 |
ttgttacatggattataatagtatagtcatggaagatcctgttcaagttcatgtcactgatggttttttcttaggagatgctaatattgttttgaagtca |
15180696 |
T |
|
| Q |
389 |
attaaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagta |
488 |
Q |
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| T |
15180697 |
attaaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagta |
15180796 |
T |
|
| Q |
489 |
acattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggt |
588 |
Q |
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| T |
15180797 |
acattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaacggttgggaagttaagtgtggatggtaatggcacaaaatgggt |
15180896 |
T |
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| Q |
589 |
gggtgatttttcaaatgttttggtatttcctaataggattag |
630 |
Q |
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| T |
15180897 |
gggtgatttttcaaatgttttggtgtttcctaataggattag |
15180938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 626 - 691
Target Start/End: Original strand, 15180963 - 15181028
Alignment:
| Q |
626 |
attagagggaccaaagtttgttgcacattcagtgagtaatgtgtcaaataatgttgtagttgttga |
691 |
Q |
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| T |
15180963 |
attagaaggaccaaagtttgttgcacattcagtgagtaatgtgtcaaataatgttgtagttgttga |
15181028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 198 - 630
Target Start/End: Complemental strand, 38859387 - 38858955
Alignment:
| Q |
198 |
caggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacat |
297 |
Q |
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| T |
38859387 |
caggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcaggaaattctttaactagaattgacaactgttatat |
38859288 |
T |
|
| Q |
298 |
ggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttt-tttcttaggggatgctaatattgttttgaagtcaattaaagg |
396 |
Q |
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| T |
38859287 |
ggattatactggtatagtaacggaagaccctgttcaagttcatgtcactaattgtctatttctt-ggggatgctaatattttaataaaggctgctgaagg |
38859189 |
T |
|
| Q |
397 |
gaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaacattgat |
496 |
Q |
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| T |
38859188 |
tcaaattttgggtttgaacatagtggataatatgttcaatggtgatcctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgat |
38859089 |
T |
|
| Q |
497 |
caagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggtgggtgatt |
596 |
Q |
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| T |
38859088 |
caagtggtgattgatagaaacaatgtgaatggtatgggcttgagatcaacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatt |
38858989 |
T |
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| Q |
597 |
tttcaaatgttttggtatttcctaataggattag |
630 |
Q |
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| T |
38858988 |
tttcatcagttttggtatttcctaatcggattag |
38858955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 38859568 - 38859516
Alignment:
| Q |
39 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcgg |
91 |
Q |
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| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcgg |
38859516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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