View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2648_high_3 (Length: 668)
Name: NF2648_high_3
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_high_3 |
 | |
|
| [»] scaffold0095 (6 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 38816443 - 38815946
Alignment:
| Q |
1 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816443 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
38816344 |
T |
|
| Q |
101 |
attaacccataggatagggttgtaaagtgcactgacactggtgattggataaaaccacnnnnnnntatgttgttgaaaacaaatgcatttacgacaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38816343 |
attaacccataggatagggttgtaaagtgcaccgacactggtgattggataaaaccacaaaaaaatacgttgttgaaaacaaatgcatttacgacaattt |
38816244 |
T |
|
| Q |
201 |
ttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccactagatacaagatccaccagtttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816243 |
ttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccactagatacaagatccaccagtttt |
38816144 |
T |
|
| Q |
301 |
gcggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatgaattcaacttatgtttaacacaaaaacaatagtgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816143 |
gcggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatgaattcaacttatgtttaacacaaaaacaatagtgca |
38816044 |
T |
|
| Q |
401 |
taagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816043 |
taagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataatcatttcttaaccacata |
38815946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 174 - 463
Target Start/End: Complemental strand, 39456895 - 39456606
Alignment:
| Q |
174 |
tgaaaacaaatgcatttacgacaatttttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagtttt |
273 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
39456895 |
tgaaaacaaatgcaattatgacaatttttattgtatgtttgcattagatggatgagttaagacataatgaaacatgttgcaatataccttaatcaatttt |
39456796 |
T |
|
| Q |
274 |
ccactagatacaagatccaccagttttgcggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatg-aattcaac |
372 |
Q |
| |
|
|| |||||| ||||| | ||||||||| |||| | |||||||| ||||| |||| | |||||||| |||||||||||| ||| ||| |||||||| |
|
|
| T |
39456795 |
ccgctagatgtaagatacttcagttttgctgacaacaactttttgaagtctgcaggtggccggtattggtcctacagaatacaaagtgatgaaattcaac |
39456696 |
T |
|
| Q |
373 |
ttatgtttaacacaaaaacaatagtgcataagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtat |
463 |
Q |
| |
|
|| |||||||||||||| ||||| || ||| | ||| |||| ||||| || |||||||||||||| ||||||| | ||| |||||||||| |
|
|
| T |
39456695 |
ttctgtttaacacaaaagcaatattgtatatg-aaatataagatagagaattatccaaccaaatgtaatgctacaagactctagttagtat |
39456606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 565 - 657
Target Start/End: Complemental strand, 38815639 - 38815547
Alignment:
| Q |
565 |
caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38815639 |
caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat |
38815547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 39464282 - 39464129
Alignment:
| Q |
1 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||| | |||||||||| ||| ||||| || ||||||||||||| |
|
|
| T |
39464282 |
agaacccactcctaaaagataggggatgtacagacaggtcaacctctcctacaaatggaaa-atccatgttttaatctcattcaatactcatgttcctac |
39464184 |
T |
|
| Q |
101 |
attaacccataggatagggttgtaaagtgcactgacactggtgattggataaaac |
155 |
Q |
| |
|
||||||||| ||| ||||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
39464183 |
attaacccacaggctagggttgtaaagggaacccacactggtgattggagaaaac |
39464129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 38815800 - 38815728
Alignment:
| Q |
497 |
taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcagcacca |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38815800 |
taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgaagcacca |
38815728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 422 - 561
Target Start/End: Complemental strand, 39456610 - 39456470
Alignment:
| Q |
422 |
agtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagtt |
519 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| || |||||| || ||||||||| ||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
39456610 |
agtatccaaccaaatgtaatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagtt |
39456511 |
T |
|
| Q |
520 |
gaaatagcatcatagatcgcattctaccacaaggggcatttg |
561 |
Q |
| |
|
||||||||| | || || |||| ||||||||||| |||||| |
|
|
| T |
39456510 |
gaaatagcaccgta-ttcacattttaccacaagggacatttg |
39456470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 637
Target Start/End: Complemental strand, 39456371 - 39456301
Alignment:
| Q |
568 |
cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt |
637 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
39456371 |
cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt |
39456301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 637
Target Start/End: Complemental strand, 39464076 - 39464003
Alignment:
| Q |
565 |
caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt |
637 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||||| |||||| ||||||| |||||||||| |
|
|
| T |
39464076 |
caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt |
39464003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 2816664 - 2816737
Alignment:
| Q |
200 |
tttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagtttt |
273 |
Q |
| |
|
||||||| |||||| || ||||||| ||||||||||||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
2816664 |
tttattgcatgtttaaatcagatggatgagttatgacataatgaaacatattgcaaaataccttgatcagtttt |
2816737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 39464134 - 39464086
Alignment:
| Q |
175 |
gaaaacaaatgcatttacgacaatttttattgtatgtttgcatgagatg |
223 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||| |||||| ||||| |
|
|
| T |
39464134 |
gaaaacaaatgcatttatgataatttttattctatgattgcatcagatg |
39464086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 39406689 - 39407241
Alignment:
| Q |
1 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | |||| ||||||| || |||| || |||||||||||||||| ||||| || | | ||||||| |
|
|
| T |
39406689 |
agaacccactcccaaaagatatgggatgtaaaaataggtaaacctctactataaatagg-atatccatgtttcaatctcattgaatatttgttttcctac |
39406787 |
T |
|
| Q |
101 |
attaacccataggataggg--ttgtaaagtgcactgacactggtgattggataaaaccacnnnnnnntatgttgttgaaaacaaatgcatttacgacaat |
198 |
Q |
| |
|
||||||||||||||||| | |||| | |||||| ||||| ||||||||| |||| || | | ||| |||||||||||||||||| |||||| |
|
|
| T |
39406788 |
attaacccataggatagtgagttgtgacgtgcacccacactagtgattggacaaaaatacaaacaaatgtattgctgaaaacaaatgcatttatgacaat |
39406887 |
T |
|
| Q |
199 |
ttttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccactagatacaagatccaccagtt |
298 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||| |
|
|
| T |
39406888 |
ttttattgtatgtttgcattagatggaatagttatgacataatgaaacatgtt-------accttgatcagttttccactagatgtgagagacttcagtc |
39406980 |
T |
|
| Q |
299 |
ttgcggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatgaa-ttcaacttatgtttaacacaaaaacaatagt |
397 |
Q |
| |
|
|||| |||||| | |||||| | || |||| | || |||| |||||||||||| ||| |||| |||||||||||||||||||||| | ||| || |
|
|
| T |
39406981 |
ttgctgacagcgactctttgaagtttgagggtgacccgtggtggtcctacagaatacaaagtggtgaaattcaacttatgtttaacacaaacaaaattgt |
39407080 |
T |
|
| Q |
398 |
gcataagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccac |
495 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
39407081 |
------------ataaaatagagaagtatccaaccaaatggaatgctataacactttagttagtattctaataatcaatataatttcatttcctaaccac |
39407168 |
T |
|
| Q |
496 |
ataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcagcacc |
568 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||| |||||||||| ||| |||||||| |||||| |
|
|
| T |
39407169 |
ataagatttagtcaattcaaagttgaaatatcatcatagatcacattctaccaaaagcggcatttgaagcacc |
39407241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 184 - 537
Target Start/End: Complemental strand, 12081580 - 12081236
Alignment:
| Q |
184 |
tgcatttacgacaatttttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccactagata |
283 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
12081580 |
tgcatttatgacgatttttattgtaagtttgcattagatggatgagttatgacatgatgaaacgtgttgtaatataccttgatcagttttccacgagatg |
12081481 |
T |
|
| Q |
284 |
caagatccaccagttttgcggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatg-aattcaacttatgtttaa |
382 |
Q |
| |
|
||||| ||||||||| |||||| |||||||| || |||||||| ||||| |||| |||||||||||| | | ||| |||||||| ||||||| |
|
|
| T |
12081480 |
taagatatttcagttttgctgacagcagctttttgaagtcagccggtgcccagtaatggtcctacagaatacaaaatgatgaaattcaacatatgttt-- |
12081383 |
T |
|
| Q |
383 |
cacaaaaacaatagtgcataagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataatc |
482 |
Q |
| |
|
|||| |||||||| || ||||| ||| |||||| |||| |||||||||||||||| ||||||||| |||| ||||||| ||||| |||| | || |
|
|
| T |
12081382 |
cacacaaacaatattgtataag-aaatataaaacagaacagtatccaaccaaatgcaatgctataacacttcagttagt-----aataa-caatgt-gtc |
12081291 |
T |
|
| Q |
483 |
atttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatc |
537 |
Q |
| |
|
|| |||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
12081290 |
atatcttaagcacataagatttagtcaactgaaagttgaaatagcatcatagatc |
12081236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 180 - 356
Target Start/End: Complemental strand, 12088404 - 12088230
Alignment:
| Q |
180 |
caaatgcatttacgacaatttttattgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccacta |
279 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||||||| ||| ||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12088404 |
caaatgcattaatgacaatatttattgtatgtttgcatcagagggatgagttagaacataa---aacatgttgtagtatacattgatcagttttccacta |
12088308 |
T |
|
| Q |
280 |
gatacaagatccaccagttttgcggac-agcttatttttgaaatctgccggtgcgcagtattggttctacagaataca |
356 |
Q |
| |
|
||| |||||| | ||||||||| ||| | | | |||||||| ||| ||||||| |||||||| | |||||||||||| |
|
|
| T |
12088307 |
gatgcaagatacttcagttttgctgacaaacatctttttgaagtctcccggtgcccagtattgctcctacagaataca |
12088230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 410 - 529
Target Start/End: Complemental strand, 12088199 - 12088078
Alignment:
| Q |
410 |
ataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataa--tcatttcttaaccacataagatttagc |
507 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| | ||||||| |||||||| |||||||||||||| | ||||||||||| ||| ||||| |
|
|
| T |
12088199 |
ataaaatagagaagtatccaacaaaatggaatgctacaacactttagctagtattgtaataatcaatataatgttttttcttaaccatgtaatgtttagt |
12088100 |
T |
|
| Q |
508 |
caattgaaagttgaaatagcat |
529 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
12088099 |
caattgaaagtagaaatagcat |
12088078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 12097453 - 12097334
Alignment:
| Q |
1 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
100 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||| ||||||| | | |||| || |||| ||||||||||| |||||| || |||||||| ||| |
|
|
| T |
12097453 |
agaatccacttccaaaagataggg-atgtaaagacaagtcaaccaatacaagaaatagg-atattcatgtttcaatttcatttaatactcatgtttctat |
12097356 |
T |
|
| Q |
101 |
attaacccataggatagggttg |
122 |
Q |
| |
|
|||||| |||||| |||||||| |
|
|
| T |
12097355 |
attaacacatagggtagggttg |
12097334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 657
Target Start/End: Complemental strand, 12087948 - 12087859
Alignment:
| Q |
568 |
cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat |
657 |
Q |
| |
|
||||||||||| || ||||||| | |||| ||||||||||||| |||||| |||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
12087948 |
cactcaagctttttaatgcaaattgtctcatttgtctttcagcataatggctatattttagccttctttttc-aaactagatatgcttcat |
12087859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 657
Target Start/End: Complemental strand, 12081135 - 12081045
Alignment:
| Q |
566 |
accactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat |
657 |
Q |
| |
|
|||||| ||||| |||| |||||| |||||||||||| |||| || |||||||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
12081135 |
accactgaagctaatttgagcaaattggctcacttgtc-ttcaacataatggcttaattttagacttctttttc-aaactagctctgcttcat |
12081045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 313 - 559
Target Start/End: Complemental strand, 20148485 - 20148233
Alignment:
| Q |
313 |
tttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatgaa-ttcaacttatgtttaacacaaaaacaatagtgcataagaaaaaat |
411 |
Q |
| |
|
|||||||| ||||||||| |||||||||| ||||||||||||||| || || ||||||||||||| |||||| | ||||| || || ||||| | | |
|
|
| T |
20148485 |
tttttgaagtctgccggtttccagtattggtaatacagaatacagagtgataaacttcaacttatgttaaacacaga--caatattgaatgagaaata-t |
20148389 |
T |
|
| Q |
412 |
aaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtattgcaat------aatcaatataat--catttcttaaccacataagatt |
503 |
Q |
| |
|
|||||| | |||||||| |||||| ||||||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
20148388 |
aaaatatacaagtatccgaccaaaaggaatgctataacactttagttagtattgtaattgtaataatcaatataatatcatttcttaaccacataagatt |
20148289 |
T |
|
| Q |
504 |
tagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatt |
559 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| |||| ||||||| ||| |||| |
|
|
| T |
20148288 |
tagttaattgaaagtagaaatagcatcatagatctcattataccacaggggacatt |
20148233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 20148645 - 20148583
Alignment:
| Q |
70 |
tttcaatatcatttgatgctcatgttcctacattaacccataggatagggttgtaaagtgcac |
132 |
Q |
| |
|
||||||| ||||| || ||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
20148645 |
tttcaatctcattaaatactcatgttcttacattaaccgataggatagggttgtaaagtgcac |
20148583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 203 - 463
Target Start/End: Original strand, 12874 - 13134
Alignment:
| Q |
203 |
attgtatgtttgcatgagatggaatagttatgacataatgaaacatgttgtaatataccttgatcagttttccactagatacaagatccaccagttttgc |
302 |
Q |
| |
|
||||||||||||||| ||||||| ||| | ||||||||||||||||||| |||||||||| |||| |||||| |||||| ||||| | ||||||||| |
|
|
| T |
12874 |
attgtatgtttgcattagatggatgagtaaagacataatgaaacatgttgcaatataccttaatcaattttccgctagatgtaagatacttcagttttgc |
12973 |
T |
|
| Q |
303 |
ggacagcttatttttgaaatctgccggtgcgcagtattggttctacagaatacagagtaatg-aattcaacttatgtttaacacaaaaacaatagtgcat |
401 |
Q |
| |
|
|||| | |||||||| ||||| |||| | |||||||| ||||||||||| ||| ||| |||||||||| |||||||||||||| ||||| || || |
|
|
| T |
12974 |
tgacaacaactttttgaagtctgcaggtggccggtattggtcatacagaatacaaagtgatgaaattcaacttctgtttaacacaaaagcaatattgtat |
13073 |
T |
|
| Q |
402 |
aagaaaaaataaaatagaaaagtatccaaccaaatggaatgctatagaactttagttagtat |
463 |
Q |
| |
|
| | ||| |||| ||||| || |||||||||||||| ||||||| | ||| |||||||||| |
|
|
| T |
13074 |
atg-aaatataagatagagaattatccaaccaaatgtaatgctacaagactctagttagtat |
13134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 24219 - 24372
Alignment:
| Q |
1 |
agaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatgtttcaatatcatttgatgctcatgttcctac |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||| | |||||||||| ||| ||||| || ||||||||||||| |
|
|
| T |
24219 |
agaacccactcctaaaagataggggatgtacagacaggtcaacctctcctacaaatggaaa-atccatgttttaatctcattcaatactcatgttcctac |
24317 |
T |
|
| Q |
101 |
attaacccataggatagggttgtaaagtgcactgacactggtgattggataaaac |
155 |
Q |
| |
|
||||||||| ||| ||||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
24318 |
attaacccacaggctagggttgtaaagggaacccacactggtgattggagaaaac |
24372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 422 - 561
Target Start/End: Original strand, 13130 - 13270
Alignment:
| Q |
422 |
agtatccaaccaaatggaatgctatagaactttagttagtattgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagtt |
519 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| || |||||| || ||||||||| ||||| |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
13130 |
agtatccaaccaaatgtaatgctataacactctaattagtactgtaataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagtt |
13229 |
T |
|
| Q |
520 |
gaaatagcatcatagatcgcattctaccacaaggggcatttg |
561 |
Q |
| |
|
||||||||| | || || |||| ||||||||||| |||||| |
|
|
| T |
13230 |
gaaatagcaccgta-ttcacattttaccacaagggacatttg |
13270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 13369 - 13439
Alignment:
| Q |
568 |
cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt |
637 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
13369 |
cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt |
13439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 637
Target Start/End: Original strand, 24425 - 24498
Alignment:
| Q |
565 |
caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt |
637 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||||| |||||| ||||||| |||||||||| |
|
|
| T |
24425 |
caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt |
24498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 24367 - 24415
Alignment:
| Q |
175 |
gaaaacaaatgcatttacgacaatttttattgtatgtttgcatgagatg |
223 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||| |||||| ||||| |
|
|
| T |
24367 |
gaaaacaaatgcatttatgataatttttattctatgattgcatcagatg |
24415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University