View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_high_5 (Length: 532)
Name: NF2648_high_5
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 331
Target Start/End: Original strand, 4755869 - 4756177
Alignment:
| Q |
23 |
catgaagtcaaaatgacttattgtttgatactttattatttaggattattggacttatatccaacctcaaaatgatgttttctttagaaaaccctaacta |
122 |
Q |
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| T |
4755869 |
catgaagtcaaaatgacttatggtttgatactttattatttaggattattggacttatatccaacctcaaaatgatgttttctttagaaaaccctaacta |
4755968 |
T |
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| Q |
123 |
taggtatttaaacattatttgttgaacaaagcttctaccacaaatgtgtaagttgtttatcttcatctacaaaatacaagaatgctgcaaaagaccctat |
222 |
Q |
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| T |
4755969 |
taggtatttaaacattatttgttgaacaaagcttctaccacaaatgtgtaagttgtttatcttcatctacaaaatacaagaatgctgcaaaagaccctat |
4756068 |
T |
|
| Q |
223 |
atttttattgtaggtattatnnnnnnnnnnnnnnnnncattaagatgaaattctagagatttggatttggtcacaacaaatacatcatgttttgttttta |
322 |
Q |
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| T |
4756069 |
atttttattgtaggtattataaaaataaaattaaaaacattaagatgaaattctagagatttgggtttgggcacaacaaatacatcatgttttgttttta |
4756168 |
T |
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| Q |
323 |
gtccctata |
331 |
Q |
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| T |
4756169 |
gtccctata |
4756177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 366 - 524
Target Start/End: Original strand, 4756176 - 4756333
Alignment:
| Q |
366 |
tattgtagtccttacaaaatttgtttatattaaaactagacctgcaatattcgttatagcctttattttgaggaaataaaatccaataagttagttaaga |
465 |
Q |
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| T |
4756176 |
tattgtagtccttacaaaatttgtttatattaaaactagacctgcaatattcgttatagtctttattttgaggaaataaaatccaatatgttagttaaga |
4756275 |
T |
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| Q |
466 |
gaaaaaggtagtatatttatctgatccttaaattcgagggtttgttccagaagtattat |
524 |
Q |
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| T |
4756276 |
gaaaaaggtagtatatttatctgatccttaaattcgaggg-ttgttccagaagtattat |
4756333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 31280270 - 31280242
Alignment:
| Q |
310 |
tgttttgtttttagtccctataaaaataa |
338 |
Q |
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| T |
31280270 |
tgttttgtttttagtccctataaaaataa |
31280242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 42928440 - 42928468
Alignment:
| Q |
310 |
tgttttgtttttagtccctataaaaataa |
338 |
Q |
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| T |
42928440 |
tgttttgtttttagtccctataaaaataa |
42928468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 50361882 - 50361910
Alignment:
| Q |
310 |
tgttttgtttttagtccctataaaaataa |
338 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50361882 |
tgttttgtttttagtccctataaaaataa |
50361910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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