View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_low_13 (Length: 237)
Name: NF2648_low_13
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12178773 - 12178999
Alignment:
| Q |
1 |
catacaaaccaaaatattaaaataagagcagtgtcaacattttctggcaaataagctaacttattcttttgtttacatttcatttcaaattcatacccaa |
100 |
Q |
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| T |
12178773 |
catacaaaccaatatattaaaataagagcagtgtcaacattttctggcaaataagctaacttattcttttgtttacatttcatttcaaattcatacccaa |
12178872 |
T |
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| Q |
101 |
cttgggacgcattggtccaaaaagcatactcactaattcaaaggcaagcca-ttttttaataatagctgcatgtatcataataattttcacatttgtaaa |
199 |
Q |
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| T |
12178873 |
cttgggacgcattggtccaaaaagcatactcactaattcaaaggcaatccatttttttaataatagctgcatgtatcataatacttttcacatttgtaaa |
12178972 |
T |
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| Q |
200 |
cttaattttcaaaggcaaccatgatga |
226 |
Q |
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| T |
12178973 |
cttaattttcaaaggcaaccaagatga |
12178999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 12191290 - 12191421
Alignment:
| Q |
15 |
tattaaaataagagcagtgtcaacattttctggcaaataagctaactta-----ttcttttgtttacatttcatttcaaattcatacccaacttgggacg |
109 |
Q |
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|||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12191290 |
tattaaaataagagcaccgtcaacattttctagctaataagctaacttactttattcttttgtttacatttcatttcaaattcatgcccaacttgggacg |
12191389 |
T |
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| Q |
110 |
cattggtccaaaaagcatactcactaattcaa |
141 |
Q |
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| T |
12191390 |
cattggtccaaaaagcatactcatttattcaa |
12191421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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