View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_low_15 (Length: 234)
Name: NF2648_low_15
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 4755828 - 4755612
Alignment:
| Q |
5 |
gtggacacggaagattcggtaaaaattttatagtagtaaaagttaacataaataacaactttcggttattaaggtaaggnnnnnnngtcatttatttaca |
104 |
Q |
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| T |
4755828 |
gtggacacggaagattcggtaaaaattttatagtagtaaaagttaacataaataacaactttcgactattaaggtaagg-aaaaaagtcatttatttacg |
4755730 |
T |
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| Q |
105 |
aagaaagaaatgacttcgtttctttcctttaaagaatgaagttgttgtatttgttca-nnnnnnncactaatgtaaaaagtatttcaaacttcccatttc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
4755729 |
aagaaagaaatgacttcgtttctttcctttaaagaatgaagttgttatatttgttaattttttttcactaatgtaaaaagtatttcaaacttcccatttc |
4755630 |
T |
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| Q |
204 |
aacacataaggaagaaaa |
221 |
Q |
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|||||||||||||||||| |
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| T |
4755629 |
aacacataaggaagaaaa |
4755612 |
T |
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