View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_low_16 (Length: 227)
Name: NF2648_low_16
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 13395335 - 13395512
Alignment:
| Q |
47 |
gcaaacttgttctctataataaatctatacatgtcttttagctaactaagcgaaaatattcacatcatcgtgttaataatagccggaatattctctataa |
146 |
Q |
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| T |
13395335 |
gcaaacttgttctctataataaatctatacatgtcttttagctaactaagcaacaatattcacatcattgtgttaataatagctggaatattctctataa |
13395434 |
T |
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| Q |
147 |
ataacttcggtgaattagagagttattctcattacctcatgtcatattcacatcattgtattattttgatatagaatg |
224 |
Q |
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| T |
13395435 |
ataacttcggtgaattagagagttattctcattacctcatgtcatattcacatcattgtattattttgatatagaatg |
13395512 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 38677520 - 38677453
Alignment:
| Q |
3 |
acgtctctaagtcaattgatctcatatttacaaagttaataatagcaaacttgttctctataataaat |
70 |
Q |
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| T |
38677520 |
acgtctctcagtcaattaatctcatatttaccaagttaacaattataaacttgttcttcataataaat |
38677453 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 11635421 - 11635488
Alignment:
| Q |
3 |
acgtctctaagtcaattgatctcatatttacaaagttaataatagcaaacttgttctctataataaat |
70 |
Q |
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| T |
11635421 |
acgtctctaagtcaatgaatatcatatttaccaagtttataacaataaacttgttctccataataaat |
11635488 |
T |
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