View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2648_low_6 (Length: 520)
Name: NF2648_low_6
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 7007238 - 7006734
Alignment:
| Q |
1 |
gagaccaaagcaattttatttaagattcatcaaacatttcacactagaatccaaacataggcacatattgatctctctagcatagtttacattacactta |
100 |
Q |
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| T |
7007238 |
gagaccaaagcaattttatttaagattcatcaaacatttcacactagaatccaaacataggcacatattgatctctctagcatagtttacattacactta |
7007139 |
T |
|
| Q |
101 |
cataatctaattcaagaacctaactaacataacattacttgaaatacatcatattattcatatcatcatacataaacaccaatcaaaatggactctctcc |
200 |
Q |
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| T |
7007138 |
cataatctaattcaagaacctaactaacataacattacttgaaatacatcatattattcatatcatcatacataaacaccaatcaaaatggactctctcc |
7007039 |
T |
|
| Q |
201 |
aatgactctacgaggtgcaggtggatcatagaaacaaatagtcaaaccagcttccttcttatcagtacaagtagcctgtgaacacccaagttgtactgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7007038 |
aatgactctacgaggtgcaggtggatcatagaaacaaatagtcaaaccagcttccttcttatcagtacaagtagcctgtgaacacccaagttgtactgat |
7006939 |
T |
|
| Q |
301 |
ttcttccacacaacctgcctataagcatgacagaactcatgattcacacaagtatcattcacatgaatgtaaagctctttcttcctcacccacaacttca |
400 |
Q |
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| T |
7006938 |
ttcttccacacaacctgcctataagcatgacagaactcatgattcacacaagtatcattcacatgaatgtaaagctctttcttcctcacccacaacttca |
7006839 |
T |
|
| Q |
401 |
ctactgagctcggcattatggcctccccaatactcacccaaagctggttaccgccgtatttactagctgttaagttggcgagaccacaagccattttgtt |
500 |
Q |
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| T |
7006838 |
ctactgagctcggcattatggcctccccaatactcacccaaagctggttaccgccgtatttactagctgttaggttggcgagaccacaagccattttgtt |
7006739 |
T |
|
| Q |
501 |
ccttt |
505 |
Q |
| |
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||||| |
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| T |
7006738 |
ccttt |
7006734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 51 - 393
Target Start/End: Complemental strand, 7013558 - 7013230
Alignment:
| Q |
51 |
ccaaacataggcacatattgatctctctagcatagtttacattacacttacataatctaattcaagaacctaactaacataacattacttgaaatacatc |
150 |
Q |
| |
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||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||| |
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| T |
7013558 |
ccaaacataggca--tattgatctctgtagcacaggttacattaaacttacataatttaattgaagaaa------aaagtaacattacttgaaatacatc |
7013467 |
T |
|
| Q |
151 |
atattattcatatcatcatacataaacaccaatcaaaatggactctctccaatgactctacgaggtgcaggtggatcatagaaacaaatagtcaaaccag |
250 |
Q |
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| T |
7013466 |
atgttattcatatcatcatacattatcatcagtcaaaatggactctctccaataacattac------caggtggatcatagaaacaaatagtcaaactag |
7013373 |
T |
|
| Q |
251 |
cttccttcttatcagtacaagtagcctgtgaacacccaagttgtactgatttcttccacacaacctgcctataagcatgacagaactcatgatt---cac |
347 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| || || | |||||||| ||| |
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| T |
7013372 |
cttccttcttaccagtacaagtagcttgtgaacacccaagttgtgctgatttcttccacacaacctgtgtataaacaccac---attcatgattcaccac |
7013276 |
T |
|
| Q |
348 |
acaagtatcattcacatgaatgtaaagctctttcttcctcacccac |
393 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||| | |||||||| |
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|
| T |
7013275 |
acaagtattattcacatgaatgtaaaactctttctccttcacccac |
7013230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 505
Target Start/End: Complemental strand, 7013186 - 7013118
Alignment:
| Q |
437 |
cccaaagctggttaccgccgtatttactagctgttaagttggcgagaccacaagccattttgttccttt |
505 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||| || | | | ||||||||||||||||||| |
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| T |
7013186 |
cccaaagctggttaccgccgtacttgctagctgttaagtttgcaaaatcgcaagccattttgttccttt |
7013118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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