View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2648_low_9 (Length: 283)
Name: NF2648_low_9
Description: NF2648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2648_low_9 |
 | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 31525569 - 31525304
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31525569 |
ttataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcaactgccaaccaca |
31525470 |
T |
|
| Q |
101 |
cactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
200 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525469 |
cactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
31525370 |
T |
|
| Q |
201 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525369 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
31525304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23538285 - 23538177
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||| |||||| |||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
23538285 |
ttattaaagtcagacttgatgagctagcagtgttgccctaatcactcattatttttcctccctaatctgtaattaatgctaatctcatctgccaaccaca |
23538186 |
T |
|
| Q |
101 |
cactaaatc |
109 |
Q |
| |
|
| ||||||| |
|
|
| T |
23538185 |
ccctaaatc |
23538177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 33365933 - 33366198
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
33365933 |
ttataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctataattaatgttaatctcaactgccaaccaca |
33366032 |
T |
|
| Q |
101 |
cactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
200 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33366033 |
cactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
33366132 |
T |
|
| Q |
201 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33366133 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
33366198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 49195525 - 49195260
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49195525 |
ttataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcatctgccaaccaca |
49195426 |
T |
|
| Q |
101 |
cactaaatcccagccgttgttttatatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
200 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49195425 |
cactaaatcacagccgttgttttacatgacctttcagttacctctatcaaccaatcagatcatccagattagaacacttccctcccaagcttgcatttat |
49195326 |
T |
|
| Q |
201 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49195325 |
ttcggccttggctgccaactacctgctattcccttaaacaaacacgtgcaattaatgtgaacttcc |
49195260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 12606702 - 12606589
Alignment:
| Q |
2 |
tataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacac |
101 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||| |||| | |||||||||||||||| ||||||||| ||||| || |||||||||||| |
|
|
| T |
12606702 |
tataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctccctaatccataattaatgctaatcccatctgccaaccacac |
12606603 |
T |
|
| Q |
102 |
actaaatcccagcc |
115 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
12606602 |
cctaaatctcagcc |
12606589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 40908325 - 40908458
Alignment:
| Q |
2 |
tataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacac |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| | | | |||||||||||||| || | ||||||||||||||| |||||||||||| |
|
|
| T |
40908325 |
tataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacatgaatttaatgttaatctcatctgccaaccacac |
40908424 |
T |
|
| Q |
102 |
actaaatcccagccgttgttttatatgacctttca |
136 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||| |
|
|
| T |
40908425 |
gttaaatctcagccgttgcttt-catgacctttca |
40908458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 46566577 - 46566691
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||| ||| | ||||||||||| ||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
46566577 |
ttataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatttgtaattaatgctaatctcatctgccaaccaca |
46566676 |
T |
|
| Q |
101 |
cactaaatcccagcc |
115 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
46566677 |
tcctaaatctcagcc |
46566691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 43469672 - 43469558
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| ||| | ||||||||||| |||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
43469672 |
ttataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgttaatttcatctgccaaccaca |
43469573 |
T |
|
| Q |
101 |
cactaaatcccagcc |
115 |
Q |
| |
|
| ||||||| ||||| |
|
|
| T |
43469572 |
ccctaaatctcagcc |
43469558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 12870164 - 12870277
Alignment:
| Q |
2 |
tataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacac |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||| |||| |||||||||| |
|
|
| T |
12870164 |
tataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgtaattaatgctaacttcaacaaccaaccacac |
12870263 |
T |
|
| Q |
102 |
actaaatcccagcc |
115 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
12870264 |
cctaaatctcagcc |
12870277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 10646172 - 10646061
Alignment:
| Q |
4 |
taaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacacac |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||| | ||||||||||| |||| |||||||||| |||||||| |||||||||||| | |
|
|
| T |
10646172 |
taaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgctaatctcatctgccaaccacaccc |
10646073 |
T |
|
| Q |
104 |
taaatcccagcc |
115 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
10646072 |
taaatctcagcc |
10646061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 3081216 - 3081345
Alignment:
| Q |
6 |
aaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacacacta |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| | | | |||||||||||||| | | ||||||||||||||| |||||| |||||| || |
|
|
| T |
3081216 |
aaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacacgcatttaatgttaatctcatctgccaatcacacatta |
3081315 |
T |
|
| Q |
106 |
aatcccagccgttgttttatatgacctttca |
136 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| |
|
|
| T |
3081316 |
aatctcagccgttgcttt-catgacctttca |
3081345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10983220 - 10983161
Alignment:
| Q |
1 |
ttataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctcc |
61 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||| | || || |||||||||| |
|
|
| T |
10983220 |
ttataaaagccagacttgatgagctggcagt-ttgccctaatcaatcctgattttccctcc |
10983161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 27765368 - 27765420
Alignment:
| Q |
49 |
tgtttttccctccctaatctgtaattaatgttaatctcaattgccaaccacac |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |
|
|
| T |
27765368 |
tgtttttccctccctaatccataattaatgctaatctcaactgccaaccacac |
27765420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 5109 - 5185
Alignment:
| Q |
2 |
tataaaagccagacttgatgagcgggcagtgttgacctaattactcatgtttttccctccctaatctgtaattaatg |
78 |
Q |
| |
|
||||||||||||| |||||| || |||||||||| |||||| |||| | |||| ||||| ||||| ||||||||| |
|
|
| T |
5109 |
tataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctccttaatccataattaatg |
5185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University