View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2649_high_16 (Length: 243)

Name: NF2649_high_16
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2649_high_16
NF2649_high_16
[»] chr6 (2 HSPs)
chr6 (87-243)||(17932959-17933112)
chr6 (19-68)||(17932884-17932933)
[»] chr3 (3 HSPs)
chr3 (87-243)||(32844821-32844972)
chr3 (185-243)||(32831550-32831608)
chr3 (19-72)||(32844986-32845041)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 87 - 243
Target Start/End: Original strand, 17932959 - 17933112
Alignment:
Q  87 accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnnnngaggaagtgtatcatagccagctctatc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  17932959 accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttaaaaaaaaaa---aggaagtgtatcatagccagctctatc 17933055  T
Q  187 aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt 243  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17933056 aaattcatgattatttggatgcttagtcatatgaaagtgtgcaatatctacttcatt 17933112  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 17932884 - 17932933
Alignment:
Q  19 atcaataggtagtgttagtgtatcatactcagccgttatatatggcgcca 68  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  17932884 atcaataggaagtgttagtgtatcatactcagcctatatatatggcgcca 17932933  T

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Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 32844972 - 32844821
Alignment:
Q  87 accgttgttgctggttttgtgcgtcttacacagaccaaaccttaataatactttgttgttnnnnnnnnnnnngaggaagtgtatcatagccagctctatc 186  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  32844972 accgttgttgctggttttgtgcatcttacacagaccaaaccttaataatactttgttgttaataaaaa-----aggaagtgtatcatagccagctctatc 32844878  T
Q  187 aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32844877 aaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacatcatt 32844821  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 32831608 - 32831550
Alignment:
Q  185 tcaaattcatgattatttggatgcttagtcatatgagagtgtgcaatatctacttcatt 243  Q
    ||||| |||||||||||||||||||    |||||||||||||||||||||||| |||||    
T  32831608 tcaaaatcatgattatttggatgctcgaccatatgagagtgtgcaatatctacatcatt 32831550  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 32845041 - 32844986
Alignment:
Q  19 atcaataggtagtgttag--tgtatcatactcagccgttatatatggcgccagatg 72  Q
    ||||||||| ||||||||  ||||||||||||||||  ||||||||||||||||||    
T  32845041 atcaataggaagtgttagcgtgtatcatactcagcctatatatatggcgccagatg 32844986  T

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