View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2649_high_19 (Length: 201)

Name: NF2649_high_19
Description: NF2649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2649_high_19
NF2649_high_19
[»] chr3 (4 HSPs)
chr3 (1-192)||(49987076-49987261)
chr3 (1-69)||(16772754-16772822)
chr3 (118-201)||(16772654-16772743)
chr3 (1-69)||(54886833-54886903)
[»] chr8 (5 HSPs)
chr8 (1-69)||(38198617-38198685)
chr8 (118-201)||(38198517-38198606)
chr8 (1-36)||(29857463-29857498)
chr8 (4-37)||(23990472-23990505)
chr8 (4-33)||(43506411-43506440)
[»] chr4 (2 HSPs)
chr4 (1-69)||(34522999-34523068)
chr4 (118-165)||(34522941-34522988)
[»] chr1 (1 HSPs)
chr1 (2-54)||(10045997-10046049)
[»] chr2 (3 HSPs)
chr2 (4-65)||(20936629-20936688)
chr2 (1-50)||(24060507-24060556)
chr2 (1-65)||(12301251-12301315)
[»] chr7 (1 HSPs)
chr7 (2-35)||(7175745-7175778)
[»] chr6 (1 HSPs)
chr6 (1-50)||(14345055-14345104)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 49987261 - 49987076
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagtttcccttnnnnnnnnnnnnntatatctttagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             | |||| ||||||    
T  49987261 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagtttcccttaaaaaaataaaaatctatccttagtt 49987162  T
Q  101 tatgtgtgaattctatatctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactactaaaatg 192  Q
    |||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49987161 tatgtgtgaat------tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactgctaaaatg 49987076  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16772822 - 16772754
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagttt 69  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  16772822 tggagagagagaccaagactctcgaatttcttgaataataattgtgtataatatttctatccgtagttt 16772754  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 16772743 - 16772654
Alignment:
Q  118 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgcc------aaaagacagtttctactactaaaatgtattttggt 201  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||      |||||||||||  || || ||||||||||||||||    
T  16772743 tctatattatctataatgtgtgtaattgtttgttgtaagcgtttctgccgtcaataaaagacagttcatattattaaaatgtattttggt 16772654  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54886903 - 54886833
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatata--tctatccttagttt 69  Q
    ||||| ||| ||||||||||||||||||| || |||| ||| |||||||||||||  ||||||||||||||    
T  54886903 tggagcgagtgaccaagactctcgaattttttagatagtaactgtgtataatatatctctatccttagttt 54886833  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38198685 - 38198617
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagttt 69  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  38198685 tggagggagagaccgatactctcgaatttcttggatagtaattgtgtataatatatctatcattagttt 38198617  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 38198606 - 38198517
Alignment:
Q  118 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgcc------aaaagacagtttctactactaaaatgtattttggt 201  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| |||      |||||||||||||||||| ||||||||||||||||    
T  38198606 tctatattatctatagtgtgtgtagttgtttgttgtaagcgtttcggccatcaataaaagacagtttctactattaaaatgtattttggt 38198517  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29857498 - 29857463
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggat 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  29857498 tggagggagagaccaaaactctcgaatttcttggat 29857463  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 23990472 - 23990505
Alignment:
Q  4 agggagagaccaagactctcgaatttcttggata 37  Q
    ||||||||||||||||||||||| ||||||||||    
T  23990472 agggagagaccaagactctcgaacttcttggata 23990505  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 43506440 - 43506411
Alignment:
Q  4 agggagagaccaagactctcgaatttcttg 33  Q
    ||||||||||||||||||||||||||||||    
T  43506440 agggagagaccaagactctcgaatttcttg 43506411  T

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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34523068 - 34522999
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgt-ataatatatctatccttagttt 69  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  34523068 tggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctctttccttagttt 34522999  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 34522988 - 34522941
Alignment:
Q  118 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgc 165  Q
    |||| |||||||||||| | |||||||||||||||||| |||||||||    
T  34522988 tctacattatctatagtttatgtaattgtttgttgtaaatgtttctgc 34522941  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 10046049 - 10045997
Alignment:
Q  2 ggagggagagaccaagactctcgaatttcttggatattaattgtgtataatat 54  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10046049 ggagggagaggccaagactctcgaatttcttggatagtaattgtgtataatat 10045997  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 20936629 - 20936688
Alignment:
Q  4 agggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatcctta 65  Q
    ||||||||||  ||||||| |||||||||||||| |||||||||||||||| ||| ||||||    
T  20936629 agggagagac--agactcttgaatttcttggatagtaattgtgtataatatctctttcctta 20936688  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24060507 - 24060556
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtata 50  Q
    |||| |||||| | ||||||||||||||||||||||| ||||||||||||    
T  24060507 tggatggagaggcgaagactctcgaatttcttggatagtaattgtgtata 24060556  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12301315 - 12301251
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatcctta 65  Q
    ||||| |||||||  |||||| ||||||||||||||| ||||||| || ||||| ||| ||||||    
T  12301315 tggagagagagactgagactcccgaatttcttggatagtaattgtatacaatatttctttcctta 12301251  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 7175778 - 7175745
Alignment:
Q  2 ggagggagagaccaagactctcgaatttcttgga 35  Q
    ||||||||||||||||||||||||||||||||||    
T  7175778 ggagggagagaccaagactctcgaatttcttgga 7175745  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 14345055 - 14345104
Alignment:
Q  1 tggagggagagaccaagactctcgaatttcttggatattaattgtgtata 50  Q
    |||||||| |||||||||||||||||||||||||||| || || ||||||    
T  14345055 tggagggaaagaccaagactctcgaatttcttggataatatttatgtata 14345104  T

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